prot_L-elsbetiae_contig13045.2411.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13045.2411.1
Unique Nameprot_L-elsbetiae_contig13045.2411.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length181
Homology
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BLAST of mRNA_L-elsbetiae_contig13045.2411.1 vs. uniprot
Match: A0A7R9WS13_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WS13_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.320e-7
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 0 
Query:    4 MVRTCPHILVLSLEKNMKPKLAWLQEKVDLNDEQVVVVVKRFPRLF-------------------------GLSAKPNLGPTL------DFFRTELRGSR----EEIRELVISSPVVLSYSLEKRMIPRAAIIEKAGLGHPVFRDYVRPIAMYTD 123
            +V+  P +L  S+++N++ KL WLQE+++L+DEQ+  +++                                LSA   + PTL      +  RT L        +E ++LVIS P VL+YSL++R+IPR   +++ G+   V    +R +A YT+
Sbjct:    3 LVKRMPMVLGYSIDENIEMKLTWLQERLNLDDEQLSKIMQTXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTALSALILMNPTLCGKNVENLERTYLFYEDCIGPDEAKQLVISVPAVLTYSLDRRLIPRLEQVQEIGIH--VDAALIRRMAKYTN 155
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BLAST of mRNA_L-elsbetiae_contig13045.2411.1 vs. uniprot
Match: UPI0011D24438 (transcription termination factor MTEF1, chloroplastic n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D24438)

HSP 1 Score: 53.5 bits (127), Expect = 3.360e-5
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 0 
Query:   36 EQVVVVVKRFPRLFGLSAKPNLGPTLDFFRTELRGSREEIRELVISSPVVLSYSLEKRMIPRAAIIEKAGLGHPVFRDYVRPIAMYT-DLRFGKWLDRLIRKG 137
            ++ V + +R P LF  S + N  P  ++FR E+ G  EE+R+     P   ++SLEKR+ PR   + ++G+G  +      P+ + T D  FGK    LIR+G
Sbjct:  222 DEAVGMARRCPALFTFSIENNFKPKFEYFRGEMGGRLEELRDF----PQYFAFSLEKRIKPRHVAVVESGVGLAL------PVMLKTTDEEFGK----LIRQG 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13045.2411.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7R9WS13_9STRA3.320e-729.03Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
UPI0011D244383.360e-533.98transcription termination factor MTEF1, chloroplas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 39..71
e-value: 0.17
score: 21.0
coord: 76..107
e-value: 1.6
score: 17.7
coord: 2..34
e-value: 0.006
score: 25.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 33..106
e-value: 2.5E-10
score: 39.8
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 1..115
e-value: 4.3E-18
score: 67.4
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 12..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13045contigL-elsbetiae_contig13045:690..3206 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13045.2411.1mRNA_L-elsbetiae_contig13045.2411.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13045 94..3777 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13045.2411.1 ID=prot_L-elsbetiae_contig13045.2411.1|Name=mRNA_L-elsbetiae_contig13045.2411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MAAMVRTCPHILVLSLEKNMKPKLAWLQEKVDLNDEQVVVVVKRFPRLFG
LSAKPNLGPTLDFFRTELRGSREEIRELVISSPVVLSYSLEKRMIPRAAI
IEKAGLGHPVFRDYVRPIAMYTDLRFGKWLDRLIRKGRIPPQQNPTTKAE
AAGSGDGGVADTPAAAATAAAAADTLLLGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf