prot_L-elsbetiae_contig12688.2163.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12688.2163.1
Unique Nameprot_L-elsbetiae_contig12688.2163.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length357
Homology
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 1.450e-89
Identity = 154/250 (61.60%), Postives = 191/250 (76.40%), Query Frame = 0
Query:  106 NKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEGESTVTSDVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHVPLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGFETRRDLPMSSQLRMVEEDPGIVRHMMVQRREAEELTARAASLAYYVNQY--RQVPKSDSSSDKRRAASAFRVMQVDPEFLNGKLNYMREKLEVSKLDFNFSYLKG 353
            +++L   LKR +I +K+T LTVLTS++SDLDLFADWYF ++ LE    + +DVA   TVVGTV+YVLLT+EFH  +   T WCR+G  L+PLQHVPLGWQL L V +EDIPQL+IT VTSPTSVAGVLNIATAGFA+LAK+AEGF TR DLPMSSQLRM++ DPG+V+H++  R +AEEL A AASLA  VN++           + KR  A+AF+VMQVDP FLNG+L Y+REKLEVS+L+     LKG
Sbjct:  118 SEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKG 366          
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.070e-46
Identity = 107/275 (38.91%), Postives = 160/275 (58.18%), Query Frame = 0
Query:   80 ALGNAERGVGSNTVHAQQGASSDESKNKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEGESTVTSDVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHVPLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGFETRRDLPMSSQLRMVEEDPGIVRHMMVQRREAEELTARAASLAYYVNQYRQVPKSDSSSDKRRAASAFRVMQVDPEFLNGKLNYMREKL-EVSKLDFNFSYLKG 353
            A G   RG+G++      G S   S       +LKR +I+ ++T + +L+S + DLDL  DW F +  L G+  +   +AL F +VGTV++ L T EF L + +  +W  KG PL+ LQHV LGWQL   V LED+PQ IIT +T PTSV GVLN+  +G ++ AKI  G+ ++R   +S+Q +M+++DP + R++   R EA++    A  L Y     R       S+ +++AA+ F+V+Q+DP F+ G L YMR  L   S+L    S L G
Sbjct:  123 APGKTSRGLGASGGRGSGGHSWFLSAKDR--QVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW--KGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANR------CSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTG 387          
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.900e-30
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 0
Query:   80 ALGNAERGVGSNTVHAQQGASSDESKNKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEGESTVTS-----------DVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHVPLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGFETRRDLPMSSQLRMVEEDPGIVRHM 275
            A G   RG+G++      G S   S       +LKR +I+ ++T + +L+S + DLDL  DW F +  L G+   T             +AL F +VGTV++ L T EF L + +  +W         LQHV LGWQL   V LED+PQ IIT +T PTSV GVLN+  +G ++ AKI  G  ++R   +S+Q +M+++DP + R++
Sbjct:  173 APGKTSRGLGASGARGSGGHSWYLSAKDR--QVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW-------KVLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNL 370          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK13_ECTSI1.450e-8961.60Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
D7G1J8_ECTSI1.070e-4638.91Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JNU7_9PHAE1.900e-3037.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 181..356
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..144
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 159..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 145..158
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.596

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12688contigL-elsbetiae_contig12688:2637..3707 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12688.2163.1mRNA_L-elsbetiae_contig12688.2163.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12688 2600..3707 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12688.2163.1 ID=prot_L-elsbetiae_contig12688.2163.1|Name=mRNA_L-elsbetiae_contig12688.2163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=357bp
MLRLAYLAILYWWQGGGLSSLSEELTAESSDEDTSTTTTSTADNTSGGNT
QKTSSTSTPAPASASQLQAPPARGITAAAALGNAERGVGSNTVHAQQGAS
SDESKNKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEG
ESTVTSDVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHV
PLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGF
ETRRDLPMSSQLRMVEEDPGIVRHMMVQRREAEELTARAASLAYYVNQYR
QVPKSDSSSDKRRAASAFRVMQVDPEFLNGKLNYMREKLEVSKLDFNFSY
LKGEQA*
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