mRNA_L-elsbetiae_contig12688.2163.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12688.2163.1
Unique NamemRNA_L-elsbetiae_contig12688.2163.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 2.180e-89
Identity = 154/250 (61.60%), Postives = 191/250 (76.40%), Query Frame = 2 
Query:  353 NKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEGESTVTSDVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHVPLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGFETRRDLPMSSQLRMVEEDPGIVRHMMVQRREAEELTARAASLAYYVNQY--RQVPKSDSSSDKRRAASAFRVMQVDPEFLNGKLNYMREKLEVSKLDFNFSYLKG 1096
            +++L   LKR +I +K+T LTVLTS++SDLDLFADWYF ++ LE    + +DVA   TVVGTV+YVLLT+EFH  +   T WCR+G  L+PLQHVPLGWQL L V +EDIPQL+IT VTSPTSVAGVLNIATAGFA+LAK+AEGF TR DLPMSSQLRM++ DPG+V+H++  R +AEEL A AASLA  VN++           + KR  A+AF+VMQVDP FLNG+L Y+REKLEVS+L+     LKG
Sbjct:  118 SEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKG 366
[Close]
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.490e-46
Identity = 107/275 (38.91%), Postives = 160/275 (58.18%), Query Frame = 2 
Query:  275 ALGNAERGVGSNTVHAQQGASSDESKNKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEGESTVTSDVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHVPLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGFETRRDLPMSSQLRMVEEDPGIVRHMMVQRREAEELTARAASLAYYVNQYRQVPKSDSSSDKRRAASAFRVMQVDPEFLNGKLNYMREKL-EVSKLDFNFSYLKG 1096
            A G   RG+G++      G S   S       +LKR +I+ ++T + +L+S + DLDL  DW F +  L G+  +   +AL F +VGTV++ L T EF L + +  +W  KG PL+ LQHV LGWQL   V LED+PQ IIT +T PTSV GVLN+  +G ++ AKI  G+ ++R   +S+Q +M+++DP + R++   R EA++    A  L Y     R       S+ +++AA+ F+V+Q+DP F+ G L YMR  L   S+L    S L G
Sbjct:  123 APGKTSRGLGASGGRGSGGHSWFLSAKDR--QVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW--KGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANR------CSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTG 387
[Close]
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.440e-30
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 2 
Query:  275 ALGNAERGVGSNTVHAQQGASSDESKNKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEGESTVTS-----------DVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHVPLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGFETRRDLPMSSQLRMVEEDPGIVRHM 862
            A G   RG+G++      G S   S       +LKR +I+ ++T + +L+S + DLDL  DW F +  L G+   T             +AL F +VGTV++ L T EF L + +  +W         LQHV LGWQL   V LED+PQ IIT +T PTSV GVLN+  +G ++ AKI  G  ++R   +S+Q +M+++DP + R++
Sbjct:  173 APGKTSRGLGASGARGSGGHSWYLSAKDR--QVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW-------KVLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNL 370
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12688.2163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK13_ECTSI2.180e-8961.60Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
D7G1J8_ECTSI1.490e-4638.91Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JNU7_9PHAE2.440e-3037.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12688contigL-elsbetiae_contig12688:2600..3707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1108
Cds size1071
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.8596473-UTR-L-elsbetiae_contig12688:2599..26361622815457.8596473-UTR-L-elsbetiae_contig12688:2599..2636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12688 2600..2636 +
1691682907.5032182-UTR-L-elsbetiae_contig12688:2599..26361691682907.5032182-UTR-L-elsbetiae_contig12688:2599..2636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12688 2600..2636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.8736985-CDS-L-elsbetiae_contig12688:2636..37071622815457.8736985-CDS-L-elsbetiae_contig12688:2636..3707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12688 2637..3707 +
1691682907.51388-CDS-L-elsbetiae_contig12688:2636..37071691682907.51388-CDS-L-elsbetiae_contig12688:2636..3707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12688 2637..3707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12688.2163.1prot_L-elsbetiae_contig12688.2163.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12688 2637..3707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12688.2163.1

>prot_L-elsbetiae_contig12688.2163.1 ID=prot_L-elsbetiae_contig12688.2163.1|Name=mRNA_L-elsbetiae_contig12688.2163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=357bp
MLRLAYLAILYWWQGGGLSSLSEELTAESSDEDTSTTTTSTADNTSGGNT
QKTSSTSTPAPASASQLQAPPARGITAAAALGNAERGVGSNTVHAQQGAS
SDESKNKELEMLLKRISIVDKLTALTVLTSILSDLDLFADWYFFRQDLEG
ESTVTSDVALAFTVVGTVVYVLLTVEFHLFNTVVTLWCRKGEPLNPLQHV
PLGWQLFLCVALEDIPQLIITCVTSPTSVAGVLNIATAGFAVLAKIAEGF
ETRRDLPMSSQLRMVEEDPGIVRHMMVQRREAEELTARAASLAYYVNQYR
QVPKSDSSSDKRRAASAFRVMQVDPEFLNGKLNYMREKLEVSKLDFNFSY
LKGEQA*
back to top

mRNA from alignment at L-elsbetiae_contig12688:2600..3707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12688.2163.1 ID=mRNA_L-elsbetiae_contig12688.2163.1|Name=mRNA_L-elsbetiae_contig12688.2163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1108bp|location=Sequence derived from alignment at L-elsbetiae_contig12688:2600..3707+ (Laminarionema elsbetiae ELsaHSoW15)
TCTACAGCAACAGACCCATCCGTGAAGAACAAGCACGATGCTGCGGCTGG
CGTACCTTGCGATCCTCTATTGGTGGCAAGGGGGGGGGCTCTCGTCCCTA
TCCGAGGAGCTGACGGCAGAGAGCTCCGACGAAGACACTTCTACCACAAC
AACATCCACGGCAGACAACACATCGGGAGGAAATACGCAGAAAACAAGCA
GCACATCAACACCAGCCCCCGCATCCGCCTCTCAGCTGCAAGCCCCACCC
GCGAGGGGTATCACGGCGGCGGCGGCGTTGGGGAACGCAGAGAGAGGAGT
TGGGTCCAACACGGTGCACGCGCAGCAGGGTGCGAGCAGTGATGAAAGCA
AGAACAAAGAGCTGGAGATGCTGCTGAAGCGGATATCCATCGTGGACAAG
TTGACGGCGCTGACCGTGCTGACTTCGATCCTGTCCGACCTGGACCTGTT
CGCGGATTGGTACTTTTTCAGACAGGACCTGGAAGGCGAATCGACGGTTA
CTTCCGACGTCGCGCTGGCTTTCACCGTGGTCGGGACCGTCGTGTACGTC
TTGCTCACGGTAGAGTTCCACCTCTTCAACACAGTGGTGACTCTGTGGTG
CCGAAAGGGCGAGCCCCTCAACCCGTTGCAGCACGTACCCCTCGGCTGGC
AGCTGTTCCTCTGCGTGGCTCTCGAAGACATCCCGCAGCTCATCATCACC
TGCGTCACTTCTCCCACGTCCGTGGCCGGCGTGCTGAACATCGCCACGGC
CGGGTTTGCCGTGCTGGCCAAGATAGCGGAGGGTTTTGAGACCCGGCGCG
ACTTGCCCATGTCCTCGCAGCTTCGTATGGTGGAGGAAGACCCCGGCATC
GTTCGGCACATGATGGTGCAGCGGCGCGAGGCCGAGGAGCTGACAGCCAG
AGCCGCCAGCCTCGCTTACTATGTGAATCAGTATAGGCAGGTGCCCAAGT
CGGACTCTTCGTCAGACAAGCGTCGGGCAGCAAGCGCCTTTCGAGTCATG
CAGGTTGACCCCGAGTTCTTGAACGGAAAGCTGAACTACATGCGAGAAAA
ACTGGAGGTCTCGAAGTTAGACTTTAATTTTTCCTACCTAAAAGGTGAGC
AGGCTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12688:2600..3707+

>mRNA_L-elsbetiae_contig12688.2163.1 ID=mRNA_L-elsbetiae_contig12688.2163.1|Name=mRNA_L-elsbetiae_contig12688.2163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2142bp|location=Sequence derived from alignment at L-elsbetiae_contig12688:2600..3707+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCGGCTGGCGTACCTTGCGATCCTCTATTGGTGGCAAGGGGGGGG
GCTCTCGTCCCTATCCGAGGAGCTGACGGCAGAGAGCTCCGACGAAGACA
CTTCTACCACAACAACATCCACGGCAGACAACACATCGGGAGGAAATACG
CAGAAAACAAGCAGCACATCAACACCAGCCCCCGCATCCGCCTCTCAGCT
GCAAGCCCCACCCGCGAGGGGTATCACGGCGGCGGCGGCGTTGGGGAACG
CAGAGAGAGGAGTTGGGTCCAACACGGTGCACGCGCAGCAGGGTGCGAGC
AGTGATGAAAGCAAGAACAAAGAGCTGGAGATGCTGCTGAAGCGGATATC
CATCGTGGACAAGTTGACGGCGCTGACCGTGCTGACTTCGATCCTGTCCG
ACCTGGACCTGTTCGCGGATTGGTACTTTTTCAGACAGGACCTGGAAGGC
GAATCGACGGTTACTTCCGACGTCGCGCTGGCTTTCACCGTGGTCGGGAC
CGTCGTGTACGTCTTGCTCACGGTAGAGTTCCACCTCTTCAACACAGTGG
TGACTCTGTGGTGCCGAAAGGGCGAGCCCCTCAACCCGTTGCAGCACGTA
CCCCTCGGCTGGCAGCTGTTCCTCTGCGTGGCTCTCGAAGACATCCCGCA
GCTCATCATCACCTGCGTCACTTCTCCCACGTCCGTGGCCGGCGTGCTGA
ACATCGCCACGGCCGGGTTTGCCGTGCTGGCCAAGATAGCGGAGGGTTTT
GAGACCCGGCGCGACTTGCCCATGTCCTCGCAGCTTCGTATGGTGGAGGA
AGACCCCGGCATCGTTCGGCACATGATGGTGCAGCGGCGCGAGGCCGAGG
AGCTGACAGCCAGAGCCGCCAGCCTCGCTTACTATGTGAATCAGTATAGG
CAGGTGCCCAAGTCGGACTCTTCGTCAGACAAGCGTCGGGCAGCAAGCGC
CTTTCGAGTCATGCAGGTTGACCCCGAGTTCTTGAACGGAAAGCTGAACT
ACATGCGAGAAAAACTGGAGGTCTCGAAGTTAGACTTTAATTTTTCCTAC
CTAAAAGGTGAGCAGGCTTGAATGCTGCGGCTGGCGTACCTTGCGATCCT
CTATTGGTGGCAAGGGGGGGGGCTCTCGTCCCTATCCGAGGAGCTGACGG
CAGAGAGCTCCGACGAAGACACTTCTACCACAACAACATCCACGGCAGAC
AACACATCGGGAGGAAATACGCAGAAAACAAGCAGCACATCAACACCAGC
CCCCGCATCCGCCTCTCAGCTGCAAGCCCCACCCGCGAGGGGTATCACGG
CGGCGGCGGCGTTGGGGAACGCAGAGAGAGGAGTTGGGTCCAACACGGTG
CACGCGCAGCAGGGTGCGAGCAGTGATGAAAGCAAGAACAAAGAGCTGGA
GATGCTGCTGAAGCGGATATCCATCGTGGACAAGTTGACGGCGCTGACCG
TGCTGACTTCGATCCTGTCCGACCTGGACCTGTTCGCGGATTGGTACTTT
TTCAGACAGGACCTGGAAGGCGAATCGACGGTTACTTCCGACGTCGCGCT
GGCTTTCACCGTGGTCGGGACCGTCGTGTACGTCTTGCTCACGGTAGAGT
TCCACCTCTTCAACACAGTGGTGACTCTGTGGTGCCGAAAGGGCGAGCCC
CTCAACCCGTTGCAGCACGTACCCCTCGGCTGGCAGCTGTTCCTCTGCGT
GGCTCTCGAAGACATCCCGCAGCTCATCATCACCTGCGTCACTTCTCCCA
CGTCCGTGGCCGGCGTGCTGAACATCGCCACGGCCGGGTTTGCCGTGCTG
GCCAAGATAGCGGAGGGTTTTGAGACCCGGCGCGACTTGCCCATGTCCTC
GCAGCTTCGTATGGTGGAGGAAGACCCCGGCATCGTTCGGCACATGATGG
TGCAGCGGCGCGAGGCCGAGGAGCTGACAGCCAGAGCCGCCAGCCTCGCT
TACTATGTGAATCAGTATAGGCAGGTGCCCAAGTCGGACTCTTCGTCAGA
CAAGCGTCGGGCAGCAAGCGCCTTTCGAGTCATGCAGGTTGACCCCGAGT
TCTTGAACGGAAAGCTGAACTACATGCGAGAAAAACTGGAGGTCTCGAAG
TTAGACTTTAATTTTTCCTACCTAAAAGGTGAGCAGGCTTGA
back to top