prot_L-elsbetiae_contig12571.2078.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12571.2078.1
Unique Nameprot_L-elsbetiae_contig12571.2078.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length185
Homology
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 8.380e-78
Identity = 142/176 (80.68%), Postives = 148/176 (84.09%), Query Frame = 0
Query:    6 NQVLSFTASGGGSKTG--GFRKQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKLTYMGLKGGISAIEKDK-VRSQPSGPAICTTGGGLRTYFR 178
            N+VLSFTA+G        GFRKQLV+MDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDR+HQKIR  SL NHCYDLRF RPQKVTIA+RVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSK+TYM LKGGISAIEKDK  R  P   A    GG  RT  R
Sbjct:  546 NKVLSFTANGXXXXXXXXGFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIR--SLVNHCYDLRFARPQKVTIAKRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKMTYMNLKGGISAIEKDKNQRIGPFDAARSILGGASRTPLR 719          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: A0A7S2WPH2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPH2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.820e-47
Identity = 87/135 (64.44%), Postives = 107/135 (79.26%), Query Frame = 0
Query:   24 RKQLVIMDEVDGMGGS-DRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKLTYMGLKGGISAIEKDKV 157
            +++L+IMDEVDGMGG+ DRGG+QELI LIK S VPII ICNDR+H KIR  SLANHC+DLR  RPQK TIARR   VA+ EG+ +D NAA++LVE+ GNDIRQVL+ LQMW R SS ++YM +K  I  +EKD +
Sbjct:    5 KRRLIIMDEVDGMGGNEDRGGVQELIRLIKASAVPIICICNDRQHTKIR--SLANHCFDLRLRRPQKGTIARRAMDVARREGLALDGNAADLLVESVGNDIRQVLNCLQMWRRNSSTVSYMDMKSRIWQVEKDSI 137          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA)

HSP 1 Score: 158 bits (400), Expect = 6.520e-42
Identity = 92/168 (54.76%), Postives = 111/168 (66.07%), Query Frame = 0
Query:    6 NQVLSFTASGGGSKTGGFR-KQLVIMDEVDGMGGSDRGG----------------IQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKLTYMGLKGGISAIEKDK 156
            N VLSF     GSK G    K+++IMDEVDGMGG DRGG                + ELI LI  ++VPII ICNDR+  KIR  SL NHC D+RF RP K  IA+R+K VA+ EG+D+D NAAEML E+ GNDIRQ LHA+QMWSR S  + YM +K G+ A+ KDK
Sbjct:  154 NTVLSF-----GSKAGSKPPKRVIIMDEVDGMGGGDRGGRNVAEADVQMRLLARSMGELIKLIAITKVPIICICNDRQDTKIR--SLVNHCIDMRFKRPVKTMIAKRMKEVAQKEGLDIDLNAAEMLSESVGNDIRQCLHAMQMWSRGSRTMAYMEVKDGLGAVSKDK 314          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: A0A7S4IHD5_9STRA (Replication factor C subunit 1 (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHD5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.720e-39
Identity = 89/175 (50.86%), Postives = 111/175 (63.43%), Query Frame = 0
Query:    6 NQVLSFTASG-GGSKTGGF-----------RKQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRK-----------SSKLTYMGLKGGISAIEKDKV 157
            +QVL+F  S  GG   GG            +K+++IMDEVDGMG  DR G+ ELI +IKKS+VPII ICNDR+ QK+R  SL  HC DLR+ RP K  IARR   V +MEGM V+ NAAE + E+ GND+RQVL+ LQMWS K           ++ LTY GLK    AI KD++
Sbjct:  705 SQVLNFAPSAKGGKGKGGXXXXXXXXPPRKQKRVIIMDEVDGMGAGDRSGMSELIAMIKKSKVPIICICNDRQSQKVR--SLVAHCLDLRYRRPVKTVIARRAVEVGRMEGMHVEPNAAEAIAESCGNDVRQVLNCLQMWSSKKRDGNSDAAAGNNDLTYKGLKDRRDAISKDEM 877          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: F0XZ23_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ23_AURAN)

HSP 1 Score: 151 bits (381), Expect = 3.080e-39
Identity = 75/137 (54.74%), Postives = 101/137 (73.72%), Query Frame = 0
Query:   25 KQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKL---TYMGLKGGISAIEKDKVR 158
            +++VIMDE+DG+ GSDRGG Q L+ LIK S  PII ICNDR+  K++  +LANHC+DLRF RP KVTIA+RV A+A  EG+ ++ NAAE+LVE+ GNDIRQ L+ALQMW+    +    +Y  +K  +S I KD ++
Sbjct:  248 RRVVIMDEIDGLSGSDRGGSQALVKLIKSSSTPIICICNDRQSAKVK--TLANHCFDLRFKRPMKVTIAKRVMAIAMKEGLTIEQNAAELLVESCGNDIRQCLNALQMWATSEGEAETCSYTAMKDRLSTISKDAIQ 382          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: A0A7S3ZNL0_9STRA (Replication factor C subunit 1 n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNL0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.080e-39
Identity = 82/144 (56.94%), Postives = 103/144 (71.53%), Query Frame = 0
Query:   17 GSKTGGFRKQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMW--SRKSSKLTYMGLKGGISAIEKDKVR 158
            G K G  R++ VIMDEVDG+  SDRGG   LI LIK +  PII ICNDR+  K++  SLANHCYDLR  RP K  +A+R+ AVA  EG+ ++ NAAE+LV++ GNDIRQ L+ALQMW  S  S K TY  +KG ISAI KD+++
Sbjct:  472 GKKGGQRRRRCVIMDEVDGLSASDRGGSAALIKLIKTTATPIICICNDRQSPKVK--SLANHCYDLRCKRPMKQIVAKRLVAVAAAEGLTLEQNAAELLVDSCGNDIRQCLNALQMWTQSNASGKATYGDMKGRISAISKDEMQ 613          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: B8C9T1_THAPS (Replication factor C subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9T1_THAPS)

HSP 1 Score: 147 bits (371), Expect = 1.320e-37
Identity = 83/158 (52.53%), Postives = 107/158 (67.72%), Query Frame = 0
Query:    6 NQVLSFTASGGGSKTGGFRKQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRK------SSKLTYMGLKGGISAIEKDKV 157
            +QVL+F  +G G      +K+ +IMDEVDGMG  DR G+ ELI +IK S+VPII ICNDR  QK++  SL  +C DLRF RP K TI RR   + ++EGM+V++NAAE + E+ GNDIRQVL+ +QMWS K      SS +TY  LK   S I KD+V
Sbjct:  737 SQVLNFR-TGDGKVKHVAQKRCIIMDEVDGMGAGDRSGMSELIQMIKNSKVPIICICNDRSSQKMK--SLVQYCMDLRFQRPNKKTIGRRAVEIGRVEGMEVEENAAEAMSESCGNDIRQVLNCMQMWSCKKNEAGQSSSVTYKDLKDRQSDINKDEV 891          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: A0A7S2PS30_9STRA (Replication factor C subunit 1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PS30_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.790e-37
Identity = 84/158 (53.16%), Postives = 107/158 (67.72%), Query Frame = 0
Query:    6 NQVLSFTASGGGSKTGGFRKQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSK------LTYMGLKGGISAIEKDKV 157
            +QVLSF A+    K    +K+++IMDEVDGMG  DR G+ +LI +IK S+VPII ICNDR+ QK+R  SL  +C DLR+ RP K TIARR   + +MEGM V+ NAAE + E+ GNDIRQVL+ LQMWS K +K      +TY  LK     I KD+V
Sbjct:  688 SQVLSF-ANQSSKKHVQPQKRVIIMDEVDGMGAGDRSGMAQLIQMIKNSKVPIICICNDRQSQKVR--SLVQYCLDLRYQRPVKTTIARRAVEIGRMEGMVVEPNAAEAIAESCGNDIRQVLNCLQMWSCKKNKGGDSANMTYKDLKDRKGEINKDEV 842          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: A0A1R2D148_9CILI (Replication factor C subunit 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D148_9CILI)

HSP 1 Score: 146 bits (369), Expect = 2.170e-37
Identity = 71/152 (46.71%), Postives = 105/152 (69.08%), Query Frame = 0
Query:    6 NQVLSFTASGGGSKTGGFRKQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKLTYMGLKGGISAIEKDKV 157
            N +LS + S   +  G   K L+IMDE+DGM G DRGG   LI +IK +++PII ICNDR+  K++  SL N+CYDL+F +P K+ + +R+  + K+EG+D++ NA E +VE++GNDIRQVL A  MW+R +S ++YM  K  +  + KD+V
Sbjct:  418 NPLLSSSKSHCLTNKGDIVKNLIIMDEIDGMSGGDRGGTTALIQVIKTTKIPIICICNDRQSPKVK--SLLNYCYDLKFAKPNKLQVVKRINDILKIEGLDIEPNAIEFVVESSGNDIRQVLTAFDMWARTNSGMSYMKAKQNLKTMGKDQV 567          
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Match: A0A1Z5JWY4_FISSO (Replication factor C subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWY4_FISSO)

HSP 1 Score: 144 bits (362), Expect = 2.050e-36
Identity = 73/134 (54.48%), Postives = 95/134 (70.90%), Query Frame = 0
Query:   24 RKQLVIMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVAKMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKLTYMGLKGGISAIEKDKV 157
            +K+ +IMDEVDGMG  DR G+ ELI +IKKS+VPI+ ICNDR+ QK++  SL  +C DLR+ RP K  IA R   V + EG++V+ NAAE L E+ GNDIRQVL+ LQMWSRK + L +  LK   + I KD +
Sbjct:  476 KKRCIIMDEVDGMGAGDRSGMAELIQMIKKSKVPIVCICNDRQSQKLK--SLIPYCLDLRYRRPTKNVIANRAVQVGQQEGLNVEQNAAEALAESCGNDIRQVLNCLQMWSRKGNSLKFKDLKERANDINKDDI 607          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12571.2078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND0_ECTSI8.380e-7880.68Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A7S2WPH2_9STRA1.820e-4764.44Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A835YT94_9STRA6.520e-4254.76P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4IHD5_9STRA1.720e-3950.86Replication factor C subunit 1 (Fragment) n=2 Tax=... [more]
F0XZ23_AURAN3.080e-3954.74AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S3ZNL0_9STRA4.080e-3956.94Replication factor C subunit 1 n=3 Tax=Pelagomonas... [more]
B8C9T1_THAPS1.320e-3752.53Replication factor C subunit 1 n=1 Tax=Thalassiosi... [more]
A0A7S2PS30_9STRA1.790e-3753.16Replication factor C subunit 1 n=1 Tax=Skeletonema... [more]
A0A1R2D148_9CILI2.170e-3746.71Replication factor C subunit 1 n=1 Tax=Stentor coe... [more]
A0A1Z5JWY4_FISSO2.050e-3654.48Replication factor C subunit 1 n=2 Tax=Fistulifera... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..86
e-value: 9.8E-15
score: 57.0
NoneNo IPR availableGENE3D1.10.8.60coord: 87..157
e-value: 1.1E-17
score: 65.4
NoneNo IPR availablePANTHERPTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18coord: 23..147
NoneNo IPR availablePANTHERPTHR23389:SF6REPLICATION FACTOR C SUBUNIT 1coord: 23..147
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 24..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12571contigL-elsbetiae_contig12571:963..5079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12571.2078.1mRNA_L-elsbetiae_contig12571.2078.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12571 963..5079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12571.2078.1 ID=prot_L-elsbetiae_contig12571.2078.1|Name=mRNA_L-elsbetiae_contig12571.2078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
AAAAKNQVLSFTASGGGSKTGGFRKQLVIMDEVDGMGGSDRGGIQELILL
IKKSRVPIIAICNDRKHQKIRRESLANHCYDLRFTRPQKVTIARRVKAVA
KMEGMDVDDNAAEMLVEANGNDIRQVLHALQMWSRKSSKLTYMGLKGGIS
AIEKDKVRSQPSGPAICTTGGGLRTYFRAYVARS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase