prot_L-elsbetiae_contig1238.1947.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1238.1947.1
Unique Nameprot_L-elsbetiae_contig1238.1947.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1058
Homology
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Match: D8LL17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL17_ECTSI)

HSP 1 Score: 950 bits (2456), Expect = 0.000e+0
Identity = 620/1108 (55.96%), Postives = 729/1108 (65.79%), Query Frame = 0
Query:    1 RHHVTANQTSPAAPSCFSQPPSSEDFAVADRGEEQWGAAASTIGGAAGFEALIGVDSVVVGHVRAAEELRATLLYAPPPQKPLKAQELAPRRPNPRGEQATHRGQRQRERPSSTGSFSPPPPGA-SLRQQRA----SLAAASAMAAVRKGDRPFYLGAARPALRGASGSLEQTPQPASGVSMANLLDIAASLFG---GAGG-GGPKSNGADGRGNAG---------EKLVTFTVDVHTGSSTTLGVTVKELGGGAVYVEDVRKLAKGCSGPAELAGILVGDVILGINYKPLEKGLVHTSALLAEATALAGFVKLQVSRAVRSNSWRHSLPGKDCPIVTELMWRMAQLKKAGILNDAERHIMAELVLQRMAWEDGTLVGPPRAQAPF---SSPAALPLDSAASDLLDALVLRVKGLREAISVRCLYATSTIETIEASSVWGLPSAEEAAPGTSATAAPEASTAPSALVTVRYVLRAEDIGTGREWLVFPQYSDFNELRQQLLLMWPPIADLPFPAKRP-VPRAVEPGSLPGAAERAG--EAVVEDGVVRLEAFLEGAMALLGIYVSIDPRCSGVLRLIQDFLGRPNNLLTDEVALTPALCDQKRAELLLYKLLNQVDSPAARLKIMLMRDFENEVSLAPDVQSLMKGASTRLRRLQDFVLEQHEEQLSLSSYASSEEKETTMRKAVRRQVELSFYLPLRRCLWKELTRRLQGPARKLSRAIKVLRCSSPSVFGVESTDIFVAKGWGPAKESMGQATRRVLPTDQIDGLRRAAEHIAVLHASLQQNARGVSGHDHDDFDERSASGGESSSSTLGVMSGDAGKSSCSR---KVLSQKESGDGGVVYVEDGTDAAYGPSSPGKGELGGRERDTNDRLLSMTEKPTCPAKNDTRGIRDGQVMTTIASDLGEPNSNVVLPSAERDQKDLADDGVGGLGTTTLAALGVIDNSRQRAEFSLNGDVAATGGHSMTEAPLRRKLKGSHNLRASASPGKKPPDMSPVSS----------GAINIG-------------DDGEQDSRDRATAVGTVSDEAMGADDFLPLFALVLVHSAPLDLLLPQTLLTHLMDADGSLSEAGYLVATLEAAVSFIAQVY 1058
            RH +    TSP A    + P SS+D A  DRGEEQW  AA+  GG +GF+AL+GV+SVVVGHVRAAEELRA+L   P P+   K +  AP  P  RGEQ     +R R+R  S  + SP    A S R+QRA    S+AA  AMAAVR+GDRP+Y+GAA  A RG   S EQTPQP  GVSMANLLDIA SLFG   GAGG GG  S   DG   +          EKLVTFTVDVHTG S TLGVTVKELGGGAV+VEDVRKL  G SGPAELAGILVGDVILGINY+PLEKGLVHTS  LAEA ALAGFVKLQ+SR VRS SWR SLP KDC +V+ELMWR AQL+KAG    AERH +A LVLQRMAWE+GT     RA AP    + P    L+SAAS LLD+LVL  KGLR+AI VRCL+  + +ET+E  SVWG P++ E A   +  A PEA+T  S   TVR+V+R ED+GTGR+WLVFP Y D + LRQ+LL MWPPIADLPFPAKR  V RA        AAE A   E VVE+ VVRLEAFL+GA++LLG+YVSIDPRCSG L ++QDFLGRP +L   ++AL+PAL DQKRAELLLY+LLNQ DSPAAR+K +LMRDFE++ SLAPDV SLMK AS+RLRRLQDFVL+ HEEQLS  +Y +SE +E  +RKAVRRQVELS YLPLRRCLWKELT R++ PARKL RAI+ LR S P+VFG+E+  +  +K WGP KE MGQATR VLPTDQIDGLRRAAEH+  LHASLQ NA   +G    D  + S +G   SS  L V S  A     SR   K  + +E G+ G V  E  T   +G   P +GE G RERD+N   L         A +D+     G+    +ASD   P+S   L  A+ +Q+              +  L V D+   +A+   + D+A       TE   R  L+ + N   S S      D+SP ++          G +N G                              SD+AMGADDFLPLFALVLVHSAPLDLLLPQT+LTHLMD DGSLSEAGYLVATLEAAVSFI QV+
Sbjct:   22 RHGLVDLSTSPRARKAPAGPASSQDLAAGDRGEEQWTKAAAA-GGNSGFQALVGVNSVVVGHVRAAEELRASLRSPPSPRDLQKIR--APGTPTRRGEQPKSAEERLRKRSVSLRTDSPSAQAAASSRRQRAGSAASIAATLAMAAVRRGDRPYYVGAAGGASRG---SPEQTPQPTEGVSMANLLDIAVSLFGSGDGAGGRGGRHSIDGDGSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSLPRKDCALVSELMWRTAQLRKAG---SAERHSIAGLVLQRMAWEEGTS----RALAPLLATTPPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLHTRTIVETVEVPSVWG-PTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGDLSALRQELLAMWPPIADLPFPAKRSSVSRAA-------AAETAETEETVVEERVVRLEAFLDGALSLLGMYVSIDPRCSGALHIVQDFLGRPEDLFNADLALSPALRDQKRAELLLYRLLNQADSPAARMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDATDSSCNGRSGSSGALSVDSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGEFGIRERDSNGLRLGGRPDRQTRAVSDSFTGDGGRATNDVASDSDGPSSAPALSLADEEQR-----------LNVVQEL-VEDDLCWQAQCVQDEDIA-------TEEVDREALRPNFNSSRSWSALSTSHDISPTAAKSSTSSWDSIGGLNEGAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXSDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVH 1089          
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Match: A0A7S1U3A3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3A3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.400e-6
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  986 DRATAVGTVSDEAMGADDFLPLFALVLVHSAPLDLLLPQTLLTHLMDADGSLSEAGYLVATLEAAVSFIAQVY 1058
            + AT+ G     AM AD+FLPLFA VLVH+ P  LLL Q L+  L+D D ++ E GY  ATL+A V  + Q++
Sbjct:  146 EEATSPGDGGLGAMSADEFLPLFAYVLVHARPRRLLLAQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQLW 218          
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Match: A0A7R9UDL5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDL5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.810e-5
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0
Query:  998 AMGADDFLPLFALVLVHSAPLDLLLPQTLLTHLMDADGSLSEAGYLVATLEAAVSFIAQVY 1058
            AM AD+FLPLFA VLVH+ P  LLL Q L+  L+D D ++ E GY  ATL+A V  + Q++
Sbjct:  390 AMSADEFLPLFAYVLVHARPRRLLLLQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQLW 450          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL17_ECTSI0.000e+055.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1U3A3_9STRA3.400e-647.95Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7R9UDL5_9STRA6.810e-552.46Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 224..302
e-value: 1.2E-4
score: 31.4
IPR001478PDZ domainPROSITEPS50106PDZcoord: 215..282
score: 9.35
IPR037191VPS9 domain superfamilyGENE3D1.20.1050.80coord: 985..1058
e-value: 7.6E-9
score: 37.3
IPR037191VPS9 domain superfamilySUPERFAMILY109993VPS9 domaincoord: 619..1056
IPR036871PX domain superfamilyGENE3D3.30.1520.10coord: 444..540
e-value: 4.4E-6
score: 28.1
IPR036871PX domain superfamilySUPERFAMILY64268PX domaincoord: 448..531
NoneNo IPR availableGENE3D2.30.42.10coord: 204..304
e-value: 5.6E-7
score: 31.6
IPR003123VPS9 domainPFAMPF02204VPS9coord: 993..1056
e-value: 9.5E-10
score: 38.6
IPR003123VPS9 domainPROSITEPS51205VPS9coord: 891..1058
score: 13.32
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 212..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1238contigL-elsbetiae_contig1238:9850..21039 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1238.1947.1mRNA_L-elsbetiae_contig1238.1947.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1238 9850..21039 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1238.1947.1 ID=prot_L-elsbetiae_contig1238.1947.1|Name=mRNA_L-elsbetiae_contig1238.1947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1058bp
RHHVTANQTSPAAPSCFSQPPSSEDFAVADRGEEQWGAAASTIGGAAGFE
ALIGVDSVVVGHVRAAEELRATLLYAPPPQKPLKAQELAPRRPNPRGEQA
THRGQRQRERPSSTGSFSPPPPGASLRQQRASLAAASAMAAVRKGDRPFY
LGAARPALRGASGSLEQTPQPASGVSMANLLDIAASLFGGAGGGGPKSNG
ADGRGNAGEKLVTFTVDVHTGSSTTLGVTVKELGGGAVYVEDVRKLAKGC
SGPAELAGILVGDVILGINYKPLEKGLVHTSALLAEATALAGFVKLQVSR
AVRSNSWRHSLPGKDCPIVTELMWRMAQLKKAGILNDAERHIMAELVLQR
MAWEDGTLVGPPRAQAPFSSPAALPLDSAASDLLDALVLRVKGLREAISV
RCLYATSTIETIEASSVWGLPSAEEAAPGTSATAAPEASTAPSALVTVRY
VLRAEDIGTGREWLVFPQYSDFNELRQQLLLMWPPIADLPFPAKRPVPRA
VEPGSLPGAAERAGEAVVEDGVVRLEAFLEGAMALLGIYVSIDPRCSGVL
RLIQDFLGRPNNLLTDEVALTPALCDQKRAELLLYKLLNQVDSPAARLKI
MLMRDFENEVSLAPDVQSLMKGASTRLRRLQDFVLEQHEEQLSLSSYASS
EEKETTMRKAVRRQVELSFYLPLRRCLWKELTRRLQGPARKLSRAIKVLR
CSSPSVFGVESTDIFVAKGWGPAKESMGQATRRVLPTDQIDGLRRAAEHI
AVLHASLQQNARGVSGHDHDDFDERSASGGESSSSTLGVMSGDAGKSSCS
RKVLSQKESGDGGVVYVEDGTDAAYGPSSPGKGELGGRERDTNDRLLSMT
EKPTCPAKNDTRGIRDGQVMTTIASDLGEPNSNVVLPSAERDQKDLADDG
VGGLGTTTLAALGVIDNSRQRAEFSLNGDVAATGGHSMTEAPLRRKLKGS
HNLRASASPGKKPPDMSPVSSGAINIGDDGEQDSRDRATAVGTVSDEAMG
ADDFLPLFALVLVHSAPLDLLLPQTLLTHLMDADGSLSEAGYLVATLEAA
VSFIAQVY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR037191VPS9_dom_sf
IPR036871PX_dom_sf
IPR003123VPS9
IPR036034PDZ_sf