mRNA_L-elsbetiae_contig1238.1947.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Match: D8LL17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL17_ECTSI) HSP 1 Score: 950 bits (2456), Expect = 0.000e+0 Identity = 620/1108 (55.96%), Postives = 729/1108 (65.79%), Query Frame = 1 Query: 1 RHHVTANQTSPAAPSCFSQPPSSEDFAVADRGEEQWGAAASTIGGAAGFEALIGVDSVVVGHVRAAEELRATLLYAPPPQKPLKAQELAPRRPNPRGEQATHRGQRQRERPSSTGSFSPPPPGA-SLRQQRA----SLAAASAMAAVRKGDRPFYLGAARPALRGASGSLEQTPQPASGVSMANLLDIAASLFG---GAGG-GGPKSNGADGRGNAG---------EKLVTFTVDVHTGSSTTLGVTVKELGGGAVYVEDVRKLAKGCSGPAELAGILVGDVILGINYKPLEKGLVHTSALLAEATALAGFVKLQVSRAVRSNSWRHSLPGKDCPIVTELMWRMAQLKKAGILNDAERHIMAELVLQRMAWEDGTLVGPPRAQAPF---SSPAALPLDSAASDLLDALVLRVKGLREAISVRCLYATSTIETIEASSVWGLPSAEEAAPGTSATAAPEASTAPSALVTVRYVLRAEDIGTGREWLVFPQYSDFNELRQQLLLMWPPIADLPFPAKRP-VPRAVEPGSLPGAAERAG--EAVVEDGVVRLEAFLEGAMALLGIYVSIDPRCSGVLRLIQDFLGRPNNLLTDEVALTPALCDQKRAELLLYKLLNQVDSPAARLKIMLMRDFENEVSLAPDVQSLMKGASTRLRRLQDFVLEQHEEQLSLSSYASSEEKETTMRKAVRRQVELSFYLPLRRCLWKELTRRLQGPARKLSRAIKVLRCSSPSVFGVESTDIFVAKGWGPAKESMGQATRRVLPTDQIDGLRRAAEHIAVLHASLQQNARGVSGHDHDDFDERSASGGESSSSTLGVMSGDAGKSSCSR---KVLSQKESGDGGVVYVEDGTDAAYGPSSPGKGELGGRERDTNDRLLSMTEKPTCPAKNDTRGIRDGQVMTTIASDLGEPNSNVVLPSAERDQKDLADDGVGGLGTTTLAALGVIDNSRQRAEFSLNGDVAATGGHSMTEAPLRRKLKGSHNLRASASPGKKPPDMSPVSS----------GAINIG-------------DDGEQDSRDRATAVGTVSDEAMGADDFLPLFALVLVHSAPLDLLLPQTLLTHLMDADGSLSEAGYLVATLEAAVSFIAQVY 3174 RH + TSP A + P SS+D A DRGEEQW AA+ GG +GF+AL+GV+SVVVGHVRAAEELRA+L P P+ K + AP P RGEQ +R R+R S + SP A S R+QRA S+AA AMAAVR+GDRP+Y+GAA A RG S EQTPQP GVSMANLLDIA SLFG GAGG GG S DG + EKLVTFTVDVHTG S TLGVTVKELGGGAV+VEDVRKL G SGPAELAGILVGDVILGINY+PLEKGLVHTS LAEA ALAGFVKLQ+SR VRS SWR SLP KDC +V+ELMWR AQL+KAG AERH +A LVLQRMAWE+GT RA AP + P L+SAAS LLD+LVL KGLR+AI VRCL+ + +ET+E SVWG P++ E A + A PEA+T S TVR+V+R ED+GTGR+WLVFP Y D + LRQ+LL MWPPIADLPFPAKR V RA AAE A E VVE+ VVRLEAFL+GA++LLG+YVSIDPRCSG L ++QDFLGRP +L ++AL+PAL DQKRAELLLY+LLNQ DSPAAR+K +LMRDFE++ SLAPDV SLMK AS+RLRRLQDFVL+ HEEQLS +Y +SE +E +RKAVRRQVELS YLPLRRCLWKELT R++ PARKL RAI+ LR S P+VFG+E+ + +K WGP KE MGQATR VLPTDQIDGLRRAAEH+ LHASLQ NA +G D + S +G SS L V S A SR K + +E G+ G V E T +G P +GE G RERD+N L A +D+ G+ +ASD P+S L A+ +Q+ + L V D+ +A+ + D+A TE R L+ + N S S D+SP ++ G +N G SD+AMGADDFLPLFALVLVHSAPLDLLLPQT+LTHLMD DGSLSEAGYLVATLEAAVSFI QV+ Sbjct: 22 RHGLVDLSTSPRARKAPAGPASSQDLAAGDRGEEQWTKAAAA-GGNSGFQALVGVNSVVVGHVRAAEELRASLRSPPSPRDLQKIR--APGTPTRRGEQPKSAEERLRKRSVSLRTDSPSAQAAASSRRQRAGSAASIAATLAMAAVRRGDRPYYVGAAGGASRG---SPEQTPQPTEGVSMANLLDIAVSLFGSGDGAGGRGGRHSIDGDGSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSLPRKDCALVSELMWRTAQLRKAG---SAERHSIAGLVLQRMAWEEGTS----RALAPLLATTPPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLHTRTIVETVEVPSVWG-PTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGDLSALRQELLAMWPPIADLPFPAKRSSVSRAA-------AAETAETEETVVEERVVRLEAFLDGALSLLGMYVSIDPRCSGALHIVQDFLGRPEDLFNADLALSPALRDQKRAELLLYRLLNQADSPAARMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDATDSSCNGRSGSSGALSVDSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGEFGIRERDSNGLRLGGRPDRQTRAVSDSFTGDGGRATNDVASDSDGPSSAPALSLADEEQR-----------LNVVQEL-VEDDLCWQAQCVQDEDIA-------TEEVDREALRPNFNSSRSWSALSTSHDISPTAAKSSTSSWDSIGGLNEGAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXSDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVH 1089
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Match: A0A7S1U3A3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3A3_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.400e-6 Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 2956 DRATAVGTVSDEAMGADDFLPLFALVLVHSAPLDLLLPQTLLTHLMDADGSLSEAGYLVATLEAAVSFIAQVY 3174 + AT+ G AM AD+FLPLFA VLVH+ P LLL Q L+ L+D D ++ E GY ATL+A V + Q++ Sbjct: 146 EEATSPGDGGLGAMSADEFLPLFAYVLVHARPRRLLLAQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQLW 218
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Match: A0A7R9UDL5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDL5_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 6.810e-5 Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1 Query: 2992 AMGADDFLPLFALVLVHSAPLDLLLPQTLLTHLMDADGSLSEAGYLVATLEAAVSFIAQVY 3174 AM AD+FLPLFA VLVH+ P LLL Q L+ L+D D ++ E GY ATL+A V + Q++ Sbjct: 390 AMSADEFLPLFAYVLVHARPRRLLLLQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQLW 450 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1238.1947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1238.1947.1 >prot_L-elsbetiae_contig1238.1947.1 ID=prot_L-elsbetiae_contig1238.1947.1|Name=mRNA_L-elsbetiae_contig1238.1947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1058bp RHHVTANQTSPAAPSCFSQPPSSEDFAVADRGEEQWGAAASTIGGAAGFEback to top mRNA from alignment at L-elsbetiae_contig1238:9850..21039+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1238.1947.1 ID=mRNA_L-elsbetiae_contig1238.1947.1|Name=mRNA_L-elsbetiae_contig1238.1947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11190bp|location=Sequence derived from alignment at L-elsbetiae_contig1238:9850..21039+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1238:9850..21039+ >mRNA_L-elsbetiae_contig1238.1947.1 ID=mRNA_L-elsbetiae_contig1238.1947.1|Name=mRNA_L-elsbetiae_contig1238.1947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6348bp|location=Sequence derived from alignment at L-elsbetiae_contig1238:9850..21039+ (Laminarionema elsbetiae ELsaHSoW15)back to top |