prot_L-elsbetiae_contig12375.1946.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12375.1946.1
Unique Nameprot_L-elsbetiae_contig12375.1946.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length188
Homology
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BLAST of mRNA_L-elsbetiae_contig12375.1946.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 8.670e-52
Identity = 126/188 (67.02%), Postives = 146/188 (77.66%), Query Frame = 0 
Query:    1 SWQEAEELVDEMFANNIPRDEYTYCAAMNACKEAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKSWNSDRKSSSFVRPTTTRNPREGALSPMQIEACEAAEFALGLMEEMKSEGVKMDVITYGSLMSALSPRGAAGADVVLELFDVLQETDIKPNSIIYVAAIRAYGDKGNWQEAEEV 188
            SW++A  LVDEMFAN++PRDEYTYCAAMNACKEA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNK+WN++R++SSF+RPT+TR  +   LSP Q EA +A +FALGLMEEMK EGV+ D+ITYGSLMSALSPRG AGAD                         RAYGDKG+W+ AE++
Sbjct:  247 SWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQM 434
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BLAST of mRNA_L-elsbetiae_contig12375.1946.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.180e-45
Identity = 120/188 (63.83%), Postives = 140/188 (74.47%), Query Frame = 0 
Query:    1 SWQEAEELVDEMFANNIPRDEYTYCAAMNACKEAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKSWNSDRKSSSFVRPTTTRNPREGALSPMQIEACEAAEFALGLMEEMKSEGVKMDVITYGSLMSALSPRGAAGADVVLELFDVLQETDIKPNSIIYVAAIRAYGDKGNWQEAEEV 188
            SW++A  LVDEMFAN++PRDEYTYCAAMNACKEA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNK+WN++R++SSF+RPT+T             EA +A +FALGLM+EMK EGV+ D+ITYGSLMSALSPRGAAGA                          RAYGDKG+W+ AE++
Sbjct:  328 SWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFMRPTST------------AEASDAGDFALGLMDEMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWKRAEQM 503
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12375.1946.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW0_ECTSI8.670e-5267.02PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVR3_9PHAE4.180e-4563.83PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 116..178
e-value: 2.3E-7
score: 30.8
coord: 8..66
e-value: 1.4E-8
score: 34.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 22..56
e-value: 3.0E-4
score: 18.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 20..54
score: 10.523
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..164
score: 8.331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..19
score: 5.283
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..188
score: 7.629
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..83
e-value: 7.9E-16
score: 60.3
coord: 103..188
e-value: 7.9E-16
score: 60.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..76
coord: 113..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12375contigL-elsbetiae_contig12375:1477..5467 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12375.1946.1mRNA_L-elsbetiae_contig12375.1946.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12375 1477..5467 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12375.1946.1 ID=prot_L-elsbetiae_contig12375.1946.1|Name=mRNA_L-elsbetiae_contig12375.1946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
SWQEAEELVDEMFANNIPRDEYTYCAAMNACKEAGKWREAAALLPRMRAD
RVPPNTIAYNTAIGACAFFGRPNKSWNSDRKSSSFVRPTTTRNPREGALS
PMQIEACEAAEFALGLMEEMKSEGVKMDVITYGSLMSALSPRGAAGADVV
LELFDVLQETDIKPNSIIYVAAIRAYGDKGNWQEAEEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf