mRNA_L-elsbetiae_contig12375.1946.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12375.1946.1
Unique NamemRNA_L-elsbetiae_contig12375.1946.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12375.1946.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 8.670e-52
Identity = 126/188 (67.02%), Postives = 146/188 (77.66%), Query Frame = 1 
Query:    1 SWQEAEELVDEMFANNIPRDEYTYCAAMNACKEAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKSWNSDRKSSSFVRPTTTRNPREGALSPMQIEACEAAEFALGLMEEMKSEGVKMDVITYGSLMSALSPRGAAGADVVLELFDVLQETDIKPNSIIYVAAIRAYGDKGNWQEAEEV 564
            SW++A  LVDEMFAN++PRDEYTYCAAMNACKEA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNK+WN++R++SSF+RPT+TR  +   LSP Q EA +A +FALGLMEEMK EGV+ D+ITYGSLMSALSPRG AGAD                         RAYGDKG+W+ AE++
Sbjct:  247 SWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQM 434
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BLAST of mRNA_L-elsbetiae_contig12375.1946.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.180e-45
Identity = 120/188 (63.83%), Postives = 140/188 (74.47%), Query Frame = 1 
Query:    1 SWQEAEELVDEMFANNIPRDEYTYCAAMNACKEAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKSWNSDRKSSSFVRPTTTRNPREGALSPMQIEACEAAEFALGLMEEMKSEGVKMDVITYGSLMSALSPRGAAGADVVLELFDVLQETDIKPNSIIYVAAIRAYGDKGNWQEAEEV 564
            SW++A  LVDEMFAN++PRDEYTYCAAMNACKEA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNK+WN++R++SSF+RPT+T             EA +A +FALGLM+EMK EGV+ D+ITYGSLMSALSPRGAAGA                          RAYGDKG+W+ AE++
Sbjct:  328 SWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFMRPTST------------AEASDAGDFALGLMDEMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWKRAEQM 503
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12375.1946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW0_ECTSI8.670e-5267.02PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVR3_9PHAE4.180e-4563.83PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12375contigL-elsbetiae_contig12375:1477..5467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue4.1e-45
Seed eggNOG ortholog2880.D7FXW0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-16_005060.1
Exons4
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12375.1946.1prot_L-elsbetiae_contig12375.1946.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12375 1477..5467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815432.220622-CDS-L-elsbetiae_contig12375:1476..15631622815432.220622-CDS-L-elsbetiae_contig12375:1476..1563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 1477..1563 +
1691682895.4462914-CDS-L-elsbetiae_contig12375:1476..15631691682895.4462914-CDS-L-elsbetiae_contig12375:1476..1563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 1477..1563 +
1622815432.2316678-CDS-L-elsbetiae_contig12375:3057..32431622815432.2316678-CDS-L-elsbetiae_contig12375:3057..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 3058..3243 +
1691682895.4569817-CDS-L-elsbetiae_contig12375:3057..32431691682895.4569817-CDS-L-elsbetiae_contig12375:3057..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 3058..3243 +
1622815432.244302-CDS-L-elsbetiae_contig12375:4791..49161622815432.244302-CDS-L-elsbetiae_contig12375:4791..4916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 4792..4916 +
1691682895.4660149-CDS-L-elsbetiae_contig12375:4791..49161691682895.4660149-CDS-L-elsbetiae_contig12375:4791..4916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 4792..4916 +
1622815432.255448-CDS-L-elsbetiae_contig12375:5301..54671622815432.255448-CDS-L-elsbetiae_contig12375:5301..5467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 5302..5467 +
1691682895.4752462-CDS-L-elsbetiae_contig12375:5301..54671691682895.4752462-CDS-L-elsbetiae_contig12375:5301..5467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12375 5302..5467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12375.1946.1

>prot_L-elsbetiae_contig12375.1946.1 ID=prot_L-elsbetiae_contig12375.1946.1|Name=mRNA_L-elsbetiae_contig12375.1946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
SWQEAEELVDEMFANNIPRDEYTYCAAMNACKEAGKWREAAALLPRMRAD
RVPPNTIAYNTAIGACAFFGRPNKSWNSDRKSSSFVRPTTTRNPREGALS
PMQIEACEAAEFALGLMEEMKSEGVKMDVITYGSLMSALSPRGAAGADVV
LELFDVLQETDIKPNSIIYVAAIRAYGDKGNWQEAEEV
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mRNA from alignment at L-elsbetiae_contig12375:1477..5467+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12375.1946.1 ID=mRNA_L-elsbetiae_contig12375.1946.1|Name=mRNA_L-elsbetiae_contig12375.1946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3991bp|location=Sequence derived from alignment at L-elsbetiae_contig12375:1477..5467+ (Laminarionema elsbetiae ELsaHSoW15)
AGTTGGCAGGAGGCTGAAGAGCTCGTGGATGAGATGTTCGCGAACAACAT
ACCGCGAGACGAGTACACCTACTGCGCCGCCATGAACGTGAGTCGTCTCA
TTATTATCCACAGCCGCATTGTTAATTTGTTTATTTTATCGCGGCCAGCC
AGCCAGCCTCCTTTGGACACCTACCGCACCTGCCTCAGAGTGTCGTATTT
TTGCGGAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCGCCCGCCCCCCACCCCCCCCCCCACCGCCCCCTTC
GGTTGTGCGTGNNNNNNNNNNTTTTTTTTTTTTTCCGCGCCCCCCCCCCC
CCCTCTTTTTACCCCCCCCCCCCTCCCCTCCATGTTTGTTTTTTTTGTTG
GCCCCCCCCCCCCCCCCCCCCCCCCCGCCGCCGAAGGCCTCCCGTAGAAT
TACCCGCGCGTGTCCGAAGTTAGCCCCAATCTTGCCTGGCTGAGTTGGTG
CAGCACATTCTCATTGCCGTCGTCTTTTCCTTTTTTTCTCTTTTCTTCTT
CTCCACACTAATTTCCAGTGCTCGATGGGCTCCTTGCCACGAGGGCGTCG
TCCTGCCAGAGTACTGGACCGTCGTCACACAGAAGGGTTCCTCTCCCCCC
GGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGCGGTGCTTGCCTACGT
TTTTTTGTCGCGAGAAGGGTTCAGCCGTGTCCCTTTCCCTCGTCGACGGT
GAAGTCGACGTTTGTGTACTCATGCCAAGCGCTGTTCACTCACTGACAGG
GACGAAAGAAAGCGAGAGAAAAAAAAAAAACTCACTTCGCGCAAGAAAAG
CAAGAAAAAAAATCGCTTCCGCCGGGACTTGAACCCCGTGACGTGCCTGC
CTGCCAGAAGGTGTCGGGGATACCAACTACCGTAGTTGACACAAGATACC
ACCCCCCCCCCCCTGGACGGATTTTCGGGGCTGCCTTCGCGAGAAAAAAC
GGGGAATATTGGTTTATATGTGAAATAGAGTAGTAGGGGTTCCGTAACCC
GAACCCTAACCCTAACCCTCAGACCACCGGGGCTGTATGATCTCTACATA
CATACTTCGTACATATCAACACGAAGAGCAGCATTATTTGTTTGGTGCTT
GGACTGCAAAAAATCGTTTCAGGCTTGCAGGGAGGCAGAGGCCCCCCTCC
ACCGTTTTATGTAGCGTTCGTTTGTGCTGATGAACACTTAATGTTTTTGA
TGGAATTCGTTCAGGCCTTTTTTGCAAAGAGGCCGGCCGCCCTGCACAAC
ATTTTAAAAATAAACAAAAGAACCAAACATTTGTCAATCAACAGCGTTTG
ATGATGTTTGAACGTTTTTGCATAGAGGGTGCCCGCCCCGCAACATTTGT
AAATCAACAGAATTTCATTTGATGATGTTTTGAGCTGAAATTCCTTCAGT
TTTTGTGTTTGCAAAGAGGCCGGCCGCCACTGGCGGTCTGAGCAAATAAT
GAATACCGCGGGGGTGAGACAGCAGTTCTTAGCAATATAACCCCGAACTC
GGCTTTATTGATCGATTGATTGTCAATTCAGGCTTGCAAGGAGGCCGGGA
AGTGGCGGGAGGCGGCCGCGTTATTGCCGCGGATGAGGGCGGACCGCGTG
CCCCCCAACACCATCGCCTACAACACGGCCATCGGGGCGTGCGCCTTCTT
CGGCAGGCCCAACAAGTCGTGGAACAGCGACCGGAAGTCCAGCTCCTTCG
TCCGTCCGACCACGACGGTGAGAAGAGAAGATAAGACAAGAGAAGAGAAG
AGAGACATGACGACTATGGATAATGACATACAAAGAGCGTAAGCTTGGAA
GCTATGTAGCTGACTGAAACTACGCCGCAGTCATTTTGTAGTCATTTTTG
GAGGTAGACCGACAAGAGGAGATAAGACAAGAAAAGAGGAGACAAGACAA
GAGGAGAGAAACACGACGAGATGGGGAGTGGGGGATCAGGGGAGGGAAGG
GAAGGAGGGAGGGAGGGGGGGGGCAAGGGGGGGGGGGGGGGTTTATTTCG
CCTGCCCGCCTAAATACAAAATTGTATATACACAGCGCGTTTTTTTTTTT
TTTTTTGGCGGAGGTGATGTTCTTTGGCGGGGAGGGAGTGACTTGACGCC
CAGTAATATGTATATATTCAGGTATATATTTGTTGGTGTTTGGTGTTGTC
GTGTGTTGTTCGTTCCCCGCGATGACGGACGCATCAGCACTGCCATGTTT
GATAAAATAAAATAAAGTTATTTCAAGGAAAAACAGACGGTGTGTGCTCG
AACGCGGTGGTGGTGGTGTAACAAAGGCAGCGAGTACGAACGAGTGATCC
CCCCCCCCCCTGTACACACACATACTCCTACATACGAGCACATCCAATGT
TTTTTGGAAGGTGTACTTTCCGTGGCTGTCTTAAATTGCCGTGAAAAGTG
ACAGGGAGGAAATCGACAGTCCTTGCCAGGGCCGGTGAAAGCGTTTTTTT
TTTTATATTCTTATTCTCCACATTTATTTCCAGTGCTCGATGGGCTCCCT
GTCACGAGGACATCTTGCCAGAGTGCTGAACCGTGGTCGCACAGAAGGGT
TTCTTTCCCCAAGGCCCCCCCCCCCCCCCCCGTCTGCGGTGCTTGTCTAA
GATTTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTTCCTTCGTCGACGATG
AGGTCGAAGTTTGTGTACACACAACCGCTAAGCGCTATCCACTGACAGGG
ACGGAAGCGAGAGAAAAAAAACTCACTTCGCAAGAAAAAGTCGCTTCCGC
TGAGATTCGAATAATTCACGACCTGCCTGCTAGAAGGTGTTCGGGGGGTG
TACCAACTAGACCACCGGGGCGACCGGGGCCTGTGAAGGCGTGCAATCTG
TGTATTTACCCCCATTTTCATGACGCCAAAAGCCAAGGTCATCAGAGCCT
ACGAACACAGCCCAGGCACGATGAGAAACGATGCATACTTTATTTACGGC
GGTGACGAAATTTAATCTTGTTAATGACGTCCGTGTCAGTCCGATATGTT
TTTCTTGAATTCTTCGTTTTCCTTGGCGGTGGATCGATCCCGTCGACGAT
TTCTCGGTGCCCCTTCGCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCGC
GCNNNNNNNNNNGCCTGCCGGGTCGCCCCCCCCCCCCCCCCCCCCCCCCT
TGTTTTTTGTTTTCACCGCACACCCCCCCCGCCCCCGCCCCCGCGCGCGT
GACCGGCCGGCGAAGAGAAATCCTCGGGAGGGGGCGCTGAGCCCGATGCA
GATTGAGGCCTGCGAGGCCGCAGAATTCGCGCTGGGACTGATGGAGGAGA
TGAAGAGCGAGGGGGTGAAGATGGACGTCATCACTTACGGGTGAGCGCGC
AGCCGAGCGAAGGAGGAAGAAGCAGAAATAAGCAGAAATAAGCCAATCGA
GGGATTATTTTGGCTGACAGAGCGACACTTTGGTCCCACGCTTGTACTTT
GAGTGCTGCTGTTGTTTTTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGTTTTCGTCGCAAATATTAACATCTCCAGACGGCGAACGCCGGCG
GCTCGTCCGTGCCGTTTGCCGGAGAAACACTACCGTCGCCGTTGTTGTCG
TTGTCGTGGCCCGTTGCCGTTTGTTCGGAGCGGGATCTGGCTGGCTCCCC
CGGACTCGTTTTTTTTTATCACCCTGTCCCCCTCAACCTACGTAACATAC
CTTCTTACGTTTGCTCTCTATTCAGGTCGCTGATGTCGGCGCTGAGCCCT
AGAGGCGCGGCGGGCGCGGACGTAGTGCTGGAGCTTTTCGACGTCCTCCA
GGAAACGGACATCAAGCCAAACAGCATCATCTACGTGGCGGCCATCCGGG
CGTACGGCGACAAGGGCAACTGGCAGGAGGCCGAAGAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12375:1477..5467+

>mRNA_L-elsbetiae_contig12375.1946.1 ID=mRNA_L-elsbetiae_contig12375.1946.1|Name=mRNA_L-elsbetiae_contig12375.1946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig12375:1477..5467+ (Laminarionema elsbetiae ELsaHSoW15)
AGTTGGCAGGAGGCTGAAGAGCTCGTGGATGAGATGTTCGCGAACAACAT
ACCGCGAGACGAGTACACCTACTGCGCCGCCATGAACAGTTGGCAGGAGG
CTGAAGAGCTCGTGGATGAGATGTTCGCGAACAACATACCGCGAGACGAG
TACACCTACTGCGCCGCCATGAACGCTTGCAAGGAGGCCGGGAAGTGGCG
GGAGGCGGCCGCGTTATTGCCGCGGATGAGGGCGGACCGCGTGCCCCCCA
ACACCATCGCCTACAACACGGCCATCGGGGCGTGCGCCTTCTTCGGCAGG
CCCAACAAGTCGTGGAACAGCGACCGGAAGTCCAGCTCCTTCGTCCGTCC
GACCACGACGGCTTGCAAGGAGGCCGGGAAGTGGCGGGAGGCGGCCGCGT
TATTGCCGCGGATGAGGGCGGACCGCGTGCCCCCCAACACCATCGCCTAC
AACACGGCCATCGGGGCGTGCGCCTTCTTCGGCAGGCCCAACAAGTCGTG
GAACAGCGACCGGAAGTCCAGCTCCTTCGTCCGTCCGACCACGACGAGAA
ATCCTCGGGAGGGGGCGCTGAGCCCGATGCAGATTGAGGCCTGCGAGGCC
GCAGAATTCGCGCTGGGACTGATGGAGGAGATGAAGAGCGAGGGGGTGAA
GATGGACGTCATCACTTACGGAGAAATCCTCGGGAGGGGGCGCTGAGCCC
GATGCAGATTGAGGCCTGCGAGGCCGCAGAATTCGCGCTGGGACTGATGG
AGGAGATGAAGAGCGAGGGGGTGAAGATGGACGTCATCACTTACGGGTCG
CTGATGTCGGCGCTGAGCCCTAGAGGCGCGGCGGGCGCGGACGTAGTGCT
GGAGCTTTTCGACGTCCTCCAGGAAACGGACATCAAGCCAAACAGCATCA
TCTACGTGGCGGCCATCCGGGCGTACGGCGACAAGGGCAACTGGCAGGAG
GCCGAAGAGGTAGTCGCTGATGTCGGCGCTGAGCCCTAGAGGCGCGGCGG
GCGCGGACGTAGTGCTGGAGCTTTTCGACGTCCTCCAGGAAACGGACATC
AAGCCAAACAGCATCATCTACGTGGCGGCCATCCGGGCGTACGGCGACAA
GGGCAACTGGCAGGAGGCCGAAGAGGTA
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