prot_L-elsbetiae_contig12284.1889.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12284.1889.1
Unique Nameprot_L-elsbetiae_contig12284.1889.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length95
Homology
BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: A0A7S0KUS0_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KUS0_MICPS)

HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7
Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = 0
Query:   28 DDDEVYQYPRAGLGPVFASIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLDSTKPRCPCCRV 94
            DDDE   +PR         ++  LRCAICG L   PVS   C  T+CSLCIR++L+  K  CP CR 
Sbjct:   24 DDDEPESWPRVEQ----RRLDESLRCAICGDLFGMPVSFATCTHTYCSLCIRRTLEFKK-ECPTCRT 85          
BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: C1ECC7_MICCC (RING-type E3 ubiquitin transferase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1ECC7_MICCC)

HSP 1 Score: 55.8 bits (133), Expect = 5.550e-7
Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = 0
Query:   28 DDDEVYQYPRAGLGPVFASIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLDSTKPRCPCCRV 94
            DDDE   +PR         ++  LRCAICG L   PVS   C  T+CSLCIR++L+  K  CP CR 
Sbjct:    6 DDDEPEAWPRVEQ----RRLDESLRCAICGDLFGMPVSFATCTHTYCSLCIRRTLEFKK-ECPTCRT 67          
BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: A0A835WUB3_9CHLO (RING-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WUB3_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 3.780e-6
Identity = 30/59 (50.85%), Postives = 32/59 (54.24%), Query Frame = 0
Query:   42 PVFASIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLD-----STKPRCPCCRVD 95
            P    +   L C IC GL D PVS PC   TFCS+CIRQSLD       K  CP CR D
Sbjct:    8 PELGDLAEALTCPICKGLFDGPVSPPC-GHTFCSMCIRQSLDFAHANKQKGTCPSCRAD 65          
BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: A0A8H5HNE0_9AGAR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HNE0_9AGAR)

HSP 1 Score: 52.8 bits (125), Expect = 6.630e-6
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 0
Query:   35 YPRAGLGPVFASIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLDSTKPRCPCCR 93
            +P   + P   +++G LRC ICG L D PV+L C    FCS C+R SL + K  CP CR
Sbjct:   15 FPPLTIAPGLRTLDGSLRCNICGELFDAPVTLNC-GHCFCSFCVRSSL-AEKQECPACR 71          
BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: A0A7S3C9W6_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C9W6_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-5
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 0
Query:   46 SIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLD----STKPRCPCCRVD 95
            ++E  LRC IC    D PVS+  C  +FCSLCIR SL+    +  PRCP CR D
Sbjct:   38 TLEESLRCDICKEFLDAPVSVAGCGHSFCSLCIRASLEFQQRAGSPRCPTCRGD 91          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S0KUS0_MICPS1.830e-746.27Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
C1ECC7_MICCC5.550e-746.27RING-type E3 ubiquitin transferase n=1 Tax=Micromo... [more]
A0A835WUB3_9CHLO3.780e-650.85RING-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A8H5HNE0_9AGAR6.630e-645.76Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A7S3C9W6_9CHLO1.690e-550.00Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 44..95
e-value: 1.4E-11
score: 45.6
IPR039577E3 ubiquitin-protein ligase Rad18PANTHERPTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 44..95
NoneNo IPR availablePANTHERPTHR14134:SF2E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 44..95
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 46..94
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 53..93
score: 9.819

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12284contigL-elsbetiae_contig12284:1838..4645 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12284.1889.1mRNA_L-elsbetiae_contig12284.1889.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12284 1480..4645 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12284.1889.1 ID=prot_L-elsbetiae_contig12284.1889.1|Name=mRNA_L-elsbetiae_contig12284.1889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MSMPASTRSGGGRAAGGAAEKGQGEEQDDDEVYQYPRAGLGPVFASIEGL
LRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLDSTKPRCPCCRVD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR039577Rad18
IPR001841Znf_RING