mRNA_L-elsbetiae_contig12284.1889.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12284.1889.1
Unique NamemRNA_L-elsbetiae_contig12284.1889.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: A0A7S0KUS0_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KUS0_MICPS)

HSP 1 Score: 53.9 bits (128), Expect = 2.200e-5
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 2 
Query:  443 DDEVYQYPRAGLGPVFASIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLDSTKPRCPCCRV 640
            DDE   +PR         ++  LRCAICG L   PVS   C  T+CSLCIR++L+  K  CP CR 
Sbjct:   25 DDEPESWPRVEQ----RRLDESLRCAICGDLFGMPVSFATCTHTYCSLCIRRTLEFKK-ECPTCRT 85
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BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: C1ECC7_MICCC (RING-type E3 ubiquitin transferase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1ECC7_MICCC)

HSP 1 Score: 53.5 bits (127), Expect = 7.710e-5
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 2 
Query:  443 DDEVYQYPRAGLGPVFASIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLDSTKPRCPCCRV 640
            DDE   +PR         ++  LRCAICG L   PVS   C  T+CSLCIR++L+  K  CP CR 
Sbjct:    7 DDEPEAWPRVEQ----RRLDESLRCAICGDLFGMPVSFATCTHTYCSLCIRRTLEFKK-ECPTCRT 67
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BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Match: A0A835WUB3_9CHLO (RING-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WUB3_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 9.060e-5
Identity = 30/59 (50.85%), Postives = 32/59 (54.24%), Query Frame = 2 
Query:  482 PVFASIEGLLRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLD-----STKPRCPCCRVD 643
            P    +   L C IC GL D PVS PC   TFCS+CIRQSLD       K  CP CR D
Sbjct:    8 PELGDLAEALTCPICKGLFDGPVSPPC-GHTFCSMCIRQSLDFAHANKQKGTCPSCRAD 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12284.1889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0KUS0_MICPS2.200e-545.45Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
C1ECC7_MICCC7.710e-545.45RING-type E3 ubiquitin transferase n=1 Tax=Micromo... [more]
A0A835WUB3_9CHLO9.060e-550.85RING-type domain-containing protein n=1 Tax=Chlamy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12284contigL-elsbetiae_contig12284:1480..4645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size644
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12284.1889.1prot_L-elsbetiae_contig12284.1889.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12284 1838..4645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.388025-UTR-L-elsbetiae_contig12284:1479..18371622815426.388025-UTR-L-elsbetiae_contig12284:1479..1837Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12284 1480..1837 +
1691682892.273401-UTR-L-elsbetiae_contig12284:1479..18371691682892.273401-UTR-L-elsbetiae_contig12284:1479..1837Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12284 1480..1837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.401832-CDS-L-elsbetiae_contig12284:1837..19951622815426.401832-CDS-L-elsbetiae_contig12284:1837..1995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12284 1838..1995 +
1691682892.280968-CDS-L-elsbetiae_contig12284:1837..19951691682892.280968-CDS-L-elsbetiae_contig12284:1837..1995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12284 1838..1995 +
1622815426.4158108-CDS-L-elsbetiae_contig12284:4518..46451622815426.4158108-CDS-L-elsbetiae_contig12284:4518..4645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12284 4519..4645 +
1691682892.2885122-CDS-L-elsbetiae_contig12284:4518..46451691682892.2885122-CDS-L-elsbetiae_contig12284:4518..4645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12284 4519..4645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12284.1889.1

>prot_L-elsbetiae_contig12284.1889.1 ID=prot_L-elsbetiae_contig12284.1889.1|Name=mRNA_L-elsbetiae_contig12284.1889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MSMPASTRSGGGRAAGGAAEKGQGEEQDDDEVYQYPRAGLGPVFASIEGL
LRCAICGGLSDPPVSLPCCQQTFCSLCIRQSLDSTKPRCPCCRVD
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mRNA from alignment at L-elsbetiae_contig12284:1480..4645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12284.1889.1 ID=mRNA_L-elsbetiae_contig12284.1889.1|Name=mRNA_L-elsbetiae_contig12284.1889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3166bp|location=Sequence derived from alignment at L-elsbetiae_contig12284:1480..4645+ (Laminarionema elsbetiae ELsaHSoW15)
CCCATACCAGGCGAGCGGAGAGAGGCGTGCGCGGCAGTGGAGTGGCGCGC
GTTTCGCGAAAGAGAGGCGCACATAACAGAGCGGGGAGGGAACCATCAGG
GCACGTGATTGACGCCGTCGGCGCCAATTCGCTCACGATTCAAATATCTT
GGCGCTCTCCTCTCGAGACACACTACATACCGCTGCTGCTGCTGCTGCTG
CTGCTTCTCTTCTCTTGCCGGTGGGAGTTCGGTTCGTGCACACCGCTTTT
CCTAACGACTGAGAACCGGCAAGAGATTTCACCCCGTGAGGTGTCGGTAC
AGTAGCTCTCTCAAGCCAAGCCGGGTGGTACTTCGCGGTGCGTGCTTCTT
CTTTGATCATGTCCATGCCGGCAAGCACGAGGAGCGGGGGGGGCAGAGCC
GCCGGCGGCGCTGCAGAGAAGGGGCAAGGGGAAGAACAAGACGACGACGA
GGTGTACCAGTACCCCAGGGCAGGCCTCGGGCCCGTGTTCGCTTCCATCG
AGGGCCTCCTCCGCTGGTGAGGCCGAAAGAAGATTGCCGACCACGTTGTT
TGAAAAGTTCATTGACTTCCAACAGGTAAGGTCAACGTGTAGAGTAATTA
GACTTTCACCACACCTCATGGGGAATCCACCTGCGGCTCTAGTTCATCCG
CCGCTTATTATCTACCCCATAGTATTTGCAATAGTCTATGTAGATATGGA
TGGAAGTCATTTTTACACGTACGTAGATTGTGTAGACTAGCTGTACTCGT
GACATCATCTCACACCAAAGTCTAGACTTAGTCTATGTACAGCAATAGTG
AATAGATAGTTCTACAGAGAGGCGGTGGATATTGGGCGAGCAGCTCCTGC
ACCTCTCACGAAGTGCCTTGAGCCCCCGAAGGTGCGTCTGACATGGTCTG
GTGGTCTGTGCGTTATGGAGTCTTCTACGTAGTCTACTCCAGTGATACGT
GATGTTGTTTTCAAGGAGGTGCTGACGTGAGCTATTTCTTGATTAAGTGC
TCGCCGCTTAGTCCAGATTTTGTGATGAAGCAAGCTCAGTCCTCCCTCTC
TGGTATGTCTCGAGGGTGGAGCACGAAGAATGAAACAAATCGATGCTCTA
GAGGCGGAGTACGAACGATTTAGGGCGTCACAAACTGTGCGGGGAGCCTC
GCAGACGAAAACACGTAAAAAAAAGACCCCCTACCAAAAGCCCCCGCCCT
GCCGAGGGCACACGCTCGCACCGGTGCGCCAGCAATTGGAGCTCACAACC
CCCATCCCAGAAGAAACAAACCACGGGGGAGGGTATCTACTACTCATATC
TAGCGTCGTTGAGGGTTTTAGACCCCGAATCGCCCTGTGAGCGTCAAATC
AGAGCTGCCTTCGAACACGCACGGAGGGCTCGGCGAGGCCAGCAATAGTA
GACAGCAGCAGCTGTAGTTCGTGTCCTACAAGACTTCTTTCAATATTAAC
GAGTGTTCTGCACACCTGGGACCTTACTATTTCCGATGTGTGTAGTTTGC
TCGTGGATGAATGACATCTGATTCTGCCCCCAAACCACCCAAAAACCATC
CTGTCGATCCGCGGACTGGCTCTCTCTCTCTCGTCCGAGCTCTTCTAGTC
CAGTACGAATGTCGATCGACGCCGAGACTTAGTGTCCTGCAAGGATTGAC
GCCATTTTTTTTGTCCTACTGTGTAGCCAAGGACGTTATCCACACGCTCT
CTGATTCCTGGCTGGCATGATTTTCTCCTAGCTGAGCTATCGACCTCTCC
ATCTCTGCCTCCACTGAAGAACTGTGTTTTTTTACGTCCCAGGAAATCCC
TCCCTAAAAACCCTTCCCGCACATTTTTTTTTTTGTTTTTCTGCCCATTA
TTGGATTTTGTCGTCTGCCCCTCTGGCCCCCATCCTCCACTTCTACTCTA
GCTAGACGACCCAACCGGGGTCACATGCGCCCCCTTGAAAACGATTTCGC
ATATCACTGGCTTTGTTTTTTTTGTTTTTTTGGAAGGGGTCCCGAACTAT
GAAGACCCGCCCTACCATAAGGGGGACCCCGAGAGCAGAGAACCACGAAT
CTCCGGAGAACCTACCGTGGAAAACAAGAAACGTTATATTGTAACCGGTT
ACCGGTTATAGATAACCGGTTACCGGCTATAGCCATCCCTGCTATTAAGC
TGTATGTACCACTGCTGCTGTCTACATACACAGTGGTGGTCAGTACATCA
GAGCTTTTCCCTGTATCTAGTCAATATGTTACAACTCCTTTGTAGTAGAT
GCCTAGTACGTCGAGCAGCTTTATTTTTATTTAGCCTGTACTTCCATGCC
AATTCCATGCCAATCTAGCATTTGAAAGGCCGTCGAATTTGTGCGGCGTT
AATTCCCCTGTATAACACTCCTGTGAAACGTCCTATGCACAGAGCTGGCC
GTAGCTGGTATTATGTAGATATGTAGCTTGTATTATACAGGATCGCGGTT
ATGTTCACTACATCCTGTCAACCGTCAGGTCGCCATTCTACCAGCATGGG
CGTACACCGCACGGCGGTGTCGCGATATTTACGTTTATGATTAGCACTTG
CGTGTGTGAGCGTTCAAGGCGCCACGTGTACTTTGGGTGGTTTATGCTCT
AGGTTCAAAGCGTGTGTGCTCTGCTGTAAGTTAGACAATAGTTGGCGTTG
GTCGCGAGCGAGCCGTTGCCTTCCCATGCGAGCCAGCGAAGTAACTATTT
ACGGCGTTGTCACAGGGGGGGCACCGCATGAGGGGGTCCACCCCCCCCTC
CTGTGGGACCCCGGTTGGGTAGCCTAGCCAAATAGTCGTAGTGGAGGAAG
GGGACCAGTGGGGCAGACGGCCAATAAACCAACAATGGGAGGAGAAAAAA
AACAAAGAAACGTTTTTCGATGAGGAAAGACATGTTCAGTCAGGTGTGCG
AGTTGAACGATGAAACCGTCGTAACCGAGGACACCACCGCCGACGTATAT
CCCTTTTCTCTCCCTCCCTGATCCGCACTCCCACACCCACCCACCCACCC
ACCCACTCGCACACCCACCTACCCACCCACCCACGACAGCGCTATCTGCG
GCGGGCTGTCGGATCCTCCGGTGTCCCTGCCGTGCTGCCAGCAGACCTTC
TGCTCCCTCTGCATCCGACAGAGCCTGGACAGCACCAAGCCTCGCTGTCC
GTGCTGCAGGGTCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12284:1480..4645+

>mRNA_L-elsbetiae_contig12284.1889.1 ID=mRNA_L-elsbetiae_contig12284.1889.1|Name=mRNA_L-elsbetiae_contig12284.1889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig12284:1480..4645+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCATGCCGGCAAGCACGAGGAGCGGGGGGGGCAGAGCCGCCGGCGG
CGCTGCAGAGAAGGGGCAAGGGGAAGAACAAGACGACGACGAGGTGTACC
AGTACCCCAGGGCAGGCCTCGGGCCCGTGTTCGCTTCCATCGAGGGCCTC
CTCCGCTGATGTCCATGCCGGCAAGCACGAGGAGCGGGGGGGGCAGAGCC
GCCGGCGGCGCTGCAGAGAAGGGGCAAGGGGAAGAACAAGACGACGACGA
GGTGTACCAGTACCCCAGGGCAGGCCTCGGGCCCGTGTTCGCTTCCATCG
AGGGCCTCCTCCGCTGCGCTATCTGCGGCGGGCTGTCGGATCCTCCGGTG
TCCCTGCCGTGCTGCCAGCAGACCTTCTGCTCCCTCTGCATCCGACAGAG
CCTGGACAGCACCAAGCCTCGCTGTCCGTGCTGCAGGGTCGACCGCTATC
TGCGGCGGGCTGTCGGATCCTCCGGTGTCCCTGCCGTGCTGCCAGCAGAC
CTTCTGCTCCCTCTGCATCCGACAGAGCCTGGACAGCACCAAGCCTCGCT
GTCCGTGCTGCAGGGTCGAC
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