prot_L-elsbetiae_contig12280.1885.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12280.1885.1
Unique Nameprot_L-elsbetiae_contig12280.1885.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length243
Homology
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BLAST of mRNA_L-elsbetiae_contig12280.1885.1 vs. uniprot
Match: D7FWM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 8.610e-75
Identity = 149/233 (63.95%), Postives = 173/233 (74.25%), Query Frame = 0 
Query:   26 MVNAGSVSPAFMLAGGRD------VGFQIVQRERRSLAPTLSTAARSAPVTRRPKAXXXXXXXXXXXXXXXXXXXI--VVGPAAGHSEKQVEWLGRIDYYGGREMWRKAEEKFQQMRDEGVYPTLPICNSLMTAYVKGKRYVNAVGFLEDLCLSNIPTDVPHDGMRVVEMAAASVTSDEA--------SGVTPAATTPIVPNLRTFNLVIAALASGGKWEKALEVSAPMRSGR 242
            MV+A +VSPAF+   G        V  Q VQRERRSLAP LST +R APVTRRP+A            XXXXXXX   VVGPAAGHSE+QV WLGR+DYYGGR+MWRKAE+KFQQM+DEGVYPTLP+CNSLM AY+KGKRYVNAVGFLEDLCL NI +DV HDG+R  +++ A+  S           +G T  AT PIVPNLRTFNLV+A LAS GKW+KAL+VSAPMR+G+
Sbjct:    1 MVHASAVSPAFLHTSGSTGTRVAFVAQQTVQRERRSLAPKLSTRSR-APVTRRPQAPRGIVSSDGGSGXXXXXXXXXXVVGPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKVSPAASGSXXXXXXXXXXEAGETAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGK 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12280.1885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWM3_ECTSI8.610e-7563.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 214..234
e-value: 0.029
score: 14.6
coord: 145..169
e-value: 0.64
score: 10.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 114..141
e-value: 9.4E-4
score: 17.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..243
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.533

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12280contigL-elsbetiae_contig12280:533..4358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12280.1885.1mRNA_L-elsbetiae_contig12280.1885.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12280 515..4358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12280.1885.1 ID=prot_L-elsbetiae_contig12280.1885.1|Name=mRNA_L-elsbetiae_contig12280.1885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MAPSRRRKGVPSAPAAVLLLARRLSMVNAGSVSPAFMLAGGRDVGFQIVQ
RERRSLAPTLSTAARSAPVTRRPKAAAAATGGGSGGGGGGGGGGIVVGPA
AGHSEKQVEWLGRIDYYGGREMWRKAEEKFQQMRDEGVYPTLPICNSLMT
AYVKGKRYVNAVGFLEDLCLSNIPTDVPHDGMRVVEMAAASVTSDEASGV
TPAATTPIVPNLRTFNLVIAALASGGKWEKALEVSAPMRSGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat