mRNA_L-elsbetiae_contig12280.1885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12280.1885.1
Unique NamemRNA_L-elsbetiae_contig12280.1885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12280.1885.1 vs. uniprot
Match: D7FWM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.070e-74
Identity = 149/233 (63.95%), Postives = 173/233 (74.25%), Query Frame = 1 
Query:   94 MVNAGSVSPAFMLAGGRD------VGFQIVQRERRSLAPTLSTAARSAPVTRRPKAXXXXXXXXXXXXXXXXXXXI--VVGPAAGHSEKQVEWLGRIDYYGGREMWRKAEEKFQQMRDEGVYPTLPICNSLMTAYVKGKRYVNAVGFLEDLCLSNIPTDVPHDGMRVVEMAAASVTSDEA--------SGVTPAATTPIVPNLRTFNLVIAALASGGKWEKALEVSAPMRSGR 744
            MV+A +VSPAF+   G        V  Q VQRERRSLAP LST +R APVTRRP+A            XXXXXXX   VVGPAAGHSE+QV WLGR+DYYGGR+MWRKAE+KFQQM+DEGVYPTLP+CNSLM AY+KGKRYVNAVGFLEDLCL NI +DV HDG+R  +++ A+  S           +G T  AT PIVPNLRTFNLV+A LAS GKW+KAL+VSAPMR+G+
Sbjct:    1 MVHASAVSPAFLHTSGSTGTRVAFVAQQTVQRERRSLAPKLSTRSR-APVTRRPQAPRGIVSSDGGSGXXXXXXXXXXVVGPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKVSPAASGSXXXXXXXXXXEAGETAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGK 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12280.1885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWM3_ECTSI1.070e-7463.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12280contigL-elsbetiae_contig12280:515..4358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue1.4e-66
Seed eggNOG ortholog2880.D7FWM3
KEGG koko:K17710
Hectar predicted targeting categorychloroplast
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-11_002470.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Exons5
Model size748
Cds size729
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12280.1885.1prot_L-elsbetiae_contig12280.1885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12280 533..4358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.94028-UTR-L-elsbetiae_contig12280:514..5321622815425.94028-UTR-L-elsbetiae_contig12280:514..532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12280 515..532 +
1691682892.0659397-UTR-L-elsbetiae_contig12280:514..5321691682892.0659397-UTR-L-elsbetiae_contig12280:514..532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12280 515..532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.9523423-CDS-L-elsbetiae_contig12280:532..7261622815425.9523423-CDS-L-elsbetiae_contig12280:532..726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 533..726 +
1691682892.0923364-CDS-L-elsbetiae_contig12280:532..7261691682892.0923364-CDS-L-elsbetiae_contig12280:532..726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 533..726 +
1622815425.9665933-CDS-L-elsbetiae_contig12280:1682..18841622815425.9665933-CDS-L-elsbetiae_contig12280:1682..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 1683..1884 +
1691682892.1011534-CDS-L-elsbetiae_contig12280:1682..18841691682892.1011534-CDS-L-elsbetiae_contig12280:1682..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 1683..1884 +
1622815426.0151484-CDS-L-elsbetiae_contig12280:2474..25401622815426.0151484-CDS-L-elsbetiae_contig12280:2474..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 2475..2540 +
1691682892.1107595-CDS-L-elsbetiae_contig12280:2474..25401691682892.1107595-CDS-L-elsbetiae_contig12280:2474..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 2475..2540 +
1622815426.0285082-CDS-L-elsbetiae_contig12280:3263..33821622815426.0285082-CDS-L-elsbetiae_contig12280:3263..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 3264..3382 +
1691682892.1230786-CDS-L-elsbetiae_contig12280:3263..33821691682892.1230786-CDS-L-elsbetiae_contig12280:3263..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 3264..3382 +
1622815426.0383854-CDS-L-elsbetiae_contig12280:4210..43581622815426.0383854-CDS-L-elsbetiae_contig12280:4210..4358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 4211..4358 +
1691682892.1313431-CDS-L-elsbetiae_contig12280:4210..43581691682892.1313431-CDS-L-elsbetiae_contig12280:4210..4358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12280 4211..4358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12280.1885.1

>prot_L-elsbetiae_contig12280.1885.1 ID=prot_L-elsbetiae_contig12280.1885.1|Name=mRNA_L-elsbetiae_contig12280.1885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MAPSRRRKGVPSAPAAVLLLARRLSMVNAGSVSPAFMLAGGRDVGFQIVQ
RERRSLAPTLSTAARSAPVTRRPKAAAAATGGGSGGGGGGGGGGIVVGPA
AGHSEKQVEWLGRIDYYGGREMWRKAEEKFQQMRDEGVYPTLPICNSLMT
AYVKGKRYVNAVGFLEDLCLSNIPTDVPHDGMRVVEMAAASVTSDEASGV
TPAATTPIVPNLRTFNLVIAALASGGKWEKALEVSAPMRSGRG
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mRNA from alignment at L-elsbetiae_contig12280:515..4358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12280.1885.1 ID=mRNA_L-elsbetiae_contig12280.1885.1|Name=mRNA_L-elsbetiae_contig12280.1885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3844bp|location=Sequence derived from alignment at L-elsbetiae_contig12280:515..4358+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACATCCAACAGAGAGATGGCCCCTTCGCGGAGACGGAAAGGCGTCCC
TTCTGCCCCAGCGGCGGTTCTTCTGCTAGCTCGTCGGCTTTCGATGGTCA
ACGCCGGCTCCGTGTCCCCGGCCTTCATGCTGGCCGGCGGCCGTGATGTT
GGTTTTCAAATCGTCCAGCGTGAGCGGCGCTCGCTAGCCCCCACGTTATC
GACGGCCGCGAGGTAAGGGGCGGAGTCGCCGCCAAGCAGGCTGATAGGGA
TATGATGGAGTGCGGATCCCGTCGGCGTCAGGGTTGGCTGCACTGTAGAG
GTGTTGTCGCCTGTTGCATAGCATTTTGGGAAAAGTAAAAGTTCAACTTC
CGACGCAGGAATGTATGTGGTCCCCTGGCAGGCGTTGACATGGTGGTCGA
TCAAAAGGTCTCCGCTTTTCGGCTGCAGGCCCCATGCATGCCCCCGCCCG
CCCTCCAGATCGCCACGAGCATGTGTGTGCGAACACCTTGTGTACCACGG
TGTCGGTGCTAAGTTGTTGTTTTGTGACACCCCGTCTCGCCCCTGTGGAT
GCTCGCGGTCTGGGGGTACCTCGTCCTACTAAATACACTACGCCATACAG
CCGTTTCTAGTGGCGTGAAAGCTGATGTTTTGAGAGGGAGCCCAGCTGTC
TTCGGCTGGCATAGAATAACAGCTGCCGACAGCACGCTGTCAAATTGTTT
TACTCACTCAACCTCCGTATTTGTGCGGTCGTCGGTTTTTAGATTTACCA
AAGAAGCAGTGCAATCTGTCATCATGTGCAAAGTCTGTTTTGACACACAC
ACACACACACACACACACACACACACACACATGTTGCTCGTGGGCGTCGT
TGGTGTTTTCAAATATTGTAGATTTGTGTAAAAAAAGTGTTGTGCGGACC
CTCTTGTCCATAGCAGTCTATGTATGTAGCATGCATGCGTCTTGCTTTCG
CGAAACCAACTGTGTCCAACGCGAAAAAAACATGTTTTCCTGCAAAATTT
CGTGTGGCTCACTTCCACACGGCACCGACATTTACATACCTGCTTTGTAG
CATCACCCCATTGTTTGGCAAACGTGTGTCTGCACCGCATACACATGTAC
ATGCATACGGGTAGACCACAGCTCTCACGTGTGCCAGTTGCCTTCTCCCC
CTCACTCCTTAATAGCAGGTCGGCACCCGTTACCCGGCGCCCGAAAGCTG
CGGCCGCGGCTACCGGTGGTGGTAGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCATCGTGGTCGGTCCCGCTGCCGGACACTCTGAGAAGCAGGTGGA
GTGGCTGGGCCGTATCGACTACTACGGGGGAAGAGAGATGTGGCGGAAGG
CGGAGGAGAAGTTTCAGCAGGTGCGTGCCTCTATCTTGTCCGATTTCGGT
TGCCAGGGTCGCGACAGGCGAGGGGGGAGGGGGGGGGGCGGCGGCTGCGA
CCATCATCTGTGCATTTGCCGCTGCGAATACGCTTCTGCGAGAGCTGGTA
GTTCGGACAAAGTACCTACCAAAGGATTGTAAAAAAGTGGCACTTGGTAG
GTGCGATTACGGTGCTTGTACAACAGCCCCGCTGCAGGTGCGTTGCGCGT
CGACCACAGAGAAAGAGCGTGCTCTTGTCTGTCGCGCCATGTGGCGGCGA
GCAGAAGAAAACAGACAGGCAGCCAGCAGGTACTGCTGCTGCTGCTGCTG
CTACCGGGGAGCAGACAAGCGTGTGTGACGGGCCAACTCTTGGCAAGGCG
AAGCCTACACAGCAGTTAGCATGCAGCAGCTGCGAACTTCCCGGCCCACG
TTCCATCCCCTATATTTTCCCAACCTCGCTATAAGGCAGGCAGGCCCCTT
GGTCAATTTCCTTCCCCCCCGTCCCGTCCGCGCTCGATGCCACTGCTGCT
GCTGCTGTTGGCGCCCGTGCCAAACCCCGCCGCGCGCGCCCGCGTCCGCG
CCTGCCACAGATGCGAGACGAGGGAGTCTACCCCACGCTGCCCATCTGCA
ACAGCCTCATGACGGCCTACGTGAAGGTTGGTGACCCCCCCGTCTCGAGC
ACAGCACATGTGCAAAACATGGGCATGTATGTTTTGTCTCGGGGCACATG
TTGTGTGATGAAGATTCGGGGTTCTTCTCCGCTGGGCCCCATCCGACCCG
GGGGCGTTAATCGCCCCATGTCCTTGATGCTGGCCTCGGCCTACTTAGCC
CTCTGGTGGTACCGTAGGTGACACAAGGTACCACACCACGCCCCCTGAAC
AGATTTCCGAAGCTCGATTCCTCCCCAGCAAGAAGAGTGTCAGTGCCGAA
AGCGGGGGGGCGTTGGAAATATCTAGACGATGGCTGCCCGAAAATGTGTC
GTTTGGTGCTGACACCCTCTCTTCGGTAGGGAGTATATTACTCTTGAGCT
CTAAAATTCGGTTCGGGGGTGTGTGTTTTCCTGTATCACCTACGGTAGGT
AATGGCCAGGCGTGCGTGCACCGTCTTGGCTCTGTAGTCTAGGTTGGGGT
ATCTAGGGTGCTAGGGTTGGGGTTATGGAATGTTTGCGGTTTCAACGCCT
CTGGTGGTACGCCGTCTCTTGCTTTTGTTGCTCGGCATTGATGGGGAAAA
AGGGGGGAAAAAACGTTTCGTCCGTGCGAGGAGAGCGAACGACCGCGCCG
CACTGCTATCTCGGCCTCTCGATATCGTTGTCACGCCTGGACGCACACAC
ACACACACACACACACCTGCGCGTCACGGCTCATAATGTTTTGCAACAGG
GGAAACGGTACGTGAACGCCGTCGGGTTCCTGGAGGATCTGTGTCTCAGC
AACATCCCCACCGACGTGCCGCACGATGGCATGAGGGTCGTCGAGATGGC
CGCCGCGAGCGTTACCAGGTATTTATGTAAGCGCCCCCAGAGTTGCATGT
CGTCGGCATGGGAGAACCGACTCGGATCCAATGTTGTACAGGGGACAAGA
GCGCTGTGACGACAGCCCGAATTAAAAACGCTGGCTAATTAGTCTGGAGT
GACTGGATACATGGAATGCTGACGTTTTCTTGGTAAATTATTGGCGTGGA
CGATGGAGATCGCGAAGAAGAATTGTGACGTTTTATTTGGAGGGAGGGGG
GTACAGTACGTACTGAGAGTCTCGTTTTCAGCACCTCTGATCAAGGCCAT
CGTGCCTCATGTCAGCGAACCCCCCCTCCCAGTTCCACGGCAGTACTACA
ATACCGCGATGTCGCCTATCACCACCCCATGCGCAAGCGGCTTTCCTTAC
CCCGATCTCCTGTATCTGTTATCTTGTTTTTCAAGGCCCTTTTTTTGTTG
TTTTCCCAGCACAACTACTGCTGGTGAGCCTTCGGTCTCGGTCGCTTCCC
CCATATTCGCAAACCAAACAACAAGGCCGGCAACAGAGCAGCAGCAACAG
GCAGCGATGGTACGCTCGCAAACAAAGCAGCAACTACTATTTATATCCGC
TCTCAACATATTCGCCGTTTCCCCCCCTTCACCCCCCCCCCCCCCCCCCC
CGCCAACCCCCCCCCCCCCCGCCCGCGCCCGGCCGCGGGGCGGGACACCC
GCGGCGCCGACCCCCACGGGGCCNNNNNNNNNNCCCCCCAACCAAACCCC
CCCCCACCCTTTCCCCCCCCCCCCCCCCCTCTCCCCCCTCCCCCCCCCCC
CCCCCCCCCCCCCCCCCTCTCGGCATACACGCGTCCCCCGCGACAGCGAC
GAGGCCAGCGGCGTGACACCAGCGGCGACGACCCCGATCGTGCCCAACCT
CCGCACGTTCAACCTCGTCATAGCCGCCCTCGCCTCCGGCGGCAAGTGGG
AGAAGGCCCTGGAGGTGTCTGCGCCGATGAGATCGGGGAGGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12280:515..4358+

>mRNA_L-elsbetiae_contig12280.1885.1 ID=mRNA_L-elsbetiae_contig12280.1885.1|Name=mRNA_L-elsbetiae_contig12280.1885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig12280:515..4358+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCCTTCGCGGAGACGGAAAGGCGTCCCTTCTGCCCCAGCGGCGGT
TCTTCTGCTAGCTCGTCGGCTTTCGATGGTCAACGCCGGCTCCGTGTCCC
CGGCCTTCATGCTGGCCGGCGGCCGTGATGTTGGTTTTCAAATCGTCCAG
CGTGAGCGGCGCTCGCTAGCCCCCACGTTATCGACGGCCGCGAGATGGCC
CCTTCGCGGAGACGGAAAGGCGTCCCTTCTGCCCCAGCGGCGGTTCTTCT
GCTAGCTCGTCGGCTTTCGATGGTCAACGCCGGCTCCGTGTCCCCGGCCT
TCATGCTGGCCGGCGGCCGTGATGTTGGTTTTCAAATCGTCCAGCGTGAG
CGGCGCTCGCTAGCCCCCACGTTATCGACGGCCGCGAGGTCGGCACCCGT
TACCCGGCGCCCGAAAGCTGCGGCCGCGGCTACCGGTGGTGGTAGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCATCGTGGTCGGTCCCGCTGCCGGA
CACTCTGAGAAGCAGGTGGAGTGGCTGGGCCGTATCGACTACTACGGGGG
AAGAGAGATGTGGCGGAAGGCGGAGGAGAAGTTTCAGCAGGTCGGCACCC
GTTACCCGGCGCCCGAAAGCTGCGGCCGCGGCTACCGGTGGTGGTAGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCATCGTGGTCGGTCCCGCTGCCG
GACACTCTGAGAAGCAGGTGGAGTGGCTGGGCCGTATCGACTACTACGGG
GGAAGAGAGATGTGGCGGAAGGCGGAGGAGAAGTTTCAGCAGATGCGAGA
CGAGGGAGTCTACCCCACGCTGCCCATCTGCAACAGCCTCATGACGGCCT
ACGTGAAGATGCGAGACGAGGGAGTCTACCCCACGCTGCCCATCTGCAAC
AGCCTCATGACGGCCTACGTGAAGGGGAAACGGTACGTGAACGCCGTCGG
GTTCCTGGAGGATCTGTGTCTCAGCAACATCCCCACCGACGTGCCGCACG
ATGGCATGAGGGTCGTCGAGATGGCCGCCGCGAGCGTTACCAGGGGAAAC
GGTACGTGAACGCCGTCGGGTTCCTGGAGGATCTGTGTCTCAGCAACATC
CCCACCGACGTGCCGCACGATGGCATGAGGGTCGTCGAGATGGCCGCCGC
GAGCGTTACCAGCGACGAGGCCAGCGGCGTGACACCAGCGGCGACGACCC
CGATCGTGCCCAACCTCCGCACGTTCAACCTCGTCATAGCCGCCCTCGCC
TCCGGCGGCAAGTGGGAGAAGGCCCTGGAGGTGTCTGCGCCGATGAGATC
GGGGAGGGGTCGACGAGGCCAGCGGCGTGACACCAGCGGCGACGACCCCG
ATCGTGCCCAACCTCCGCACGTTCAACCTCGTCATAGCCGCCCTCGCCTC
CGGCGGCAAGTGGGAGAAGGCCCTGGAGGTGTCTGCGCCGATGAGATCGG
GGAGGGGT
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