prot_L-elsbetiae_contig12207.1840.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12207.1840.1
Unique Nameprot_L-elsbetiae_contig12207.1840.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length56
Homology
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BLAST of mRNA_L-elsbetiae_contig12207.1840.1 vs. uniprot
Match: D8LMT7_ECTSI (Phasmid Socket Absent family member (Psa-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT7_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.720e-13
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   12 RVQRLEAKLHCFDELDQVLETERQSVEHARAELLLEQARSMLSK 55
            RVQRLEAKLHCFDELDQVLETER  +EH RAEL+ EQARSML K
Sbjct:  164 RVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 207
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BLAST of mRNA_L-elsbetiae_contig12207.1840.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.420e-13
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   12 RVQRLEAKLHCFDELDQVLETERQSVEHARAELLLEQARSMLSK 55
            RVQRLEAKLHCFDELDQVLETER  +EH RAEL+ EQARSML K
Sbjct: 1081 RVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 1124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12207.1840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMT7_ECTSI1.720e-1384.09Phasmid Socket Absent family member (Psa-1) n=1 Ta... [more]
A0A6H5JSE9_9PHAE8.420e-1384.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
IPR032451SMARCC, C-terminalPFAMPF16495SWIRM-assoc_1coord: 12..50
e-value: 2.2E-9
score: 37.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12207contigL-elsbetiae_contig12207:1174..1698 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12207.1840.1mRNA_L-elsbetiae_contig12207.1840.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12207 826..1960 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12207.1840.1 ID=prot_L-elsbetiae_contig12207.1840.1|Name=mRNA_L-elsbetiae_contig12207.1840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MCRSLHRCSRCRVQRLEAKLHCFDELDQVLETERQSVEHARAELLLEQAR
SMLSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032451SMARCC_C