mRNA_L-elsbetiae_contig12207.1840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12207.1840.1
Unique NamemRNA_L-elsbetiae_contig12207.1840.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12207.1840.1 vs. uniprot
Match: D8LMT7_ECTSI (Phasmid Socket Absent family member (Psa-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.690e-11
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  382 RVQRLEAKLHCFDELDQVLETERQSVEHARAELLLEQARSMLSK 513
            RVQRLEAKLHCFDELDQVLETER  +EH RAEL+ EQARSML K
Sbjct:  164 RVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 207
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BLAST of mRNA_L-elsbetiae_contig12207.1840.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.140e-10
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  382 RVQRLEAKLHCFDELDQVLETERQSVEHARAELLLEQARSMLSK 513
            RVQRLEAKLHCFDELDQVLETER  +EH RAEL+ EQARSML K
Sbjct: 1081 RVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 1124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12207.1840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMT7_ECTSI3.690e-1184.09Phasmid Socket Absent family member (Psa-1) n=1 Ta... [more]
A0A6H5JSE9_9PHAE3.140e-1084.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12207contigL-elsbetiae_contig12207:826..1960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D8LMT7
KEGG koko:K11649
KEGG Pathwayko04714,ko05225,map04714,map05225
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000429,GO:0000436,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005987,GO:0006066,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010453,GO:0010455,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016052,GO:0016514,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031494,GO:0031496,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032991,GO:0042221,GO:0042393,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044107,GO:0044109,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046164,GO:0046352,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000112,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5259@1,KOG1279@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons2
Model size778
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12207.1840.1prot_L-elsbetiae_contig12207.1840.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12207 1174..1698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815420.708168-UTR-L-elsbetiae_contig12207:825..11731622815420.708168-UTR-L-elsbetiae_contig12207:825..1173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12207 826..1173 +
1691682889.2223668-UTR-L-elsbetiae_contig12207:825..11731691682889.2223668-UTR-L-elsbetiae_contig12207:825..1173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12207 826..1173 +
1622815420.7464345-UTR-L-elsbetiae_contig12207:1698..19601622815420.7464345-UTR-L-elsbetiae_contig12207:1698..1960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12207 1699..1960 +
1691682889.2571652-UTR-L-elsbetiae_contig12207:1698..19601691682889.2571652-UTR-L-elsbetiae_contig12207:1698..1960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12207 1699..1960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815420.7216568-CDS-L-elsbetiae_contig12207:1173..12571622815420.7216568-CDS-L-elsbetiae_contig12207:1173..1257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12207 1174..1257 +
1691682889.2345653-CDS-L-elsbetiae_contig12207:1173..12571691682889.2345653-CDS-L-elsbetiae_contig12207:1173..1257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12207 1174..1257 +
1622815420.7340107-CDS-L-elsbetiae_contig12207:1614..16981622815420.7340107-CDS-L-elsbetiae_contig12207:1614..1698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12207 1615..1698 +
1691682889.2442417-CDS-L-elsbetiae_contig12207:1614..16981691682889.2442417-CDS-L-elsbetiae_contig12207:1614..1698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12207 1615..1698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12207.1840.1

>prot_L-elsbetiae_contig12207.1840.1 ID=prot_L-elsbetiae_contig12207.1840.1|Name=mRNA_L-elsbetiae_contig12207.1840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MCRSLHRCSRCRVQRLEAKLHCFDELDQVLETERQSVEHARAELLLEQAR
SMLSK*
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mRNA from alignment at L-elsbetiae_contig12207:826..1960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12207.1840.1 ID=mRNA_L-elsbetiae_contig12207.1840.1|Name=mRNA_L-elsbetiae_contig12207.1840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1135bp|location=Sequence derived from alignment at L-elsbetiae_contig12207:826..1960+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTATTTCAATCCCGAACCGGAAATCCAATTAGGAAATAAGCCGGGGCA
TGTTTTTGTGCGTGTTGCCAATCTGGCCTGGTTGTTTTGCCGCACGTTGT
CCATGCAGCAGTAGTACAACTCGTGTTGGCTCTAAATATACCACCCAGGT
AAACCGGGAGTGGTTTTTGCACATCAACGTAGGACCGCCCACGCCGGAAA
TTAAGTTTACCTAGGGATATACCCTAACCCCAACCACCGACCCCCCCTTT
CCCGGTTTCCATACTTTATCTCATATATTAGCTGAAGACGAAAACCCTGC
GTAGACTACTGTCAACGTACATCATCACCAACACAAACCCTTGGTGTTAT
GTGCCGATCTCTCCACCGCTGTTCTCGATGCAGGGTGCAACGATTGGAGG
CGAAGCTTCACTGCTTCGATGAGCTAGACCAGGTCAGTCTTGTACCCGCG
TCTAGAAACTTGCTTGCCGCTTGCTTTCTCCGCATAGCTTTGTACCCACA
ATGAATGCTGCAACGGTAGCAGTAGTAACGCCCGCCCGCCCTGTGAGAGA
GGACGTTTCGAAAAGCGCCGCGTTTCAGGTTTTCCCACGGCTCAGTTCAA
CAAACCCCGTCAAGCAATCTCGCCACGCTTCTACATGAGTAGATTCAGCG
CGGCATCACCGTTTTCCAGTTGTATGTATTCAGGTGTTGTCCGTGAGAAT
ACTTCTACATAGAATTTATGTATTTGCACGGGCCTTGACATTCAGCCGTC
CACCCCCGTGCATGCGTTTCTTCATGGCATTCATTCCAGGTGCTTGAAAC
GGAGCGTCAGTCCGTGGAGCACGCCCGGGCCGAGCTACTCTTGGAGCAGG
CTAGGTCTATGCTGTCCAAGTGATATGCCATGCAAGCGCGGGGAAGACTT
TCGGCGTAGATAAAAAGAGTCGAAGAAGACGGGCGGCGTATCTACGGCTT
CTTCTCGTGCGCCCAAGCAGCAGCGGGACCGAAGCGTGCGCGAAAATCCC
GTGTGGCCCGGATACTGTTGCCACGTGTGCGTACAAACATACGTAGAATA
TACATACAAAACACATGTATGTACGCGTTTGGGTTGTTTCTGTTGTTTTA
TCGCTGCGTGGGTTTGGCGTGCGGATTACACGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12207:826..1960+

>mRNA_L-elsbetiae_contig12207.1840.1 ID=mRNA_L-elsbetiae_contig12207.1840.1|Name=mRNA_L-elsbetiae_contig12207.1840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig12207:826..1960+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCGATCTCTCCACCGCTGTTCTCGATGCAGGGTGCAACGATTGGA
GGCGAAGCTTCACTGCTTCGATGAGCTAGACCAGATGTGCCGATCTCTCC
ACCGCTGTTCTCGATGCAGGGTGCAACGATTGGAGGCGAAGCTTCACTGC
TTCGATGAGCTAGACCAGGTGCTTGAAACGGAGCGTCAGTCCGTGGAGCA
CGCCCGGGCCGAGCTACTCTTGGAGCAGGCTAGGTCTATGCTGTCCAAGT
GAGTGCTTGAAACGGAGCGTCAGTCCGTGGAGCACGCCCGGGCCGAGCTA
CTCTTGGAGCAGGCTAGGTCTATGCTGTCCAAGTGA
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