prot_L-elsbetiae_contig122.1829.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig122.1829.1
Unique Nameprot_L-elsbetiae_contig122.1829.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length955
Homology
BLAST of mRNA_L-elsbetiae_contig122.1829.1 vs. uniprot
Match: A0A6H5KJS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS1_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 8.360e-37
Identity = 117/250 (46.80%), Postives = 147/250 (58.80%), Query Frame = 0
Query:    7 GKTPQQCVSSFASGPFRVP-------SASNTLLLIHPA-GSSLPEQLQSQRRHVRSRPRGATSAALALTDLSPSRHTRHCPRSSAIRVGAGRGRGGGVAWGALRTAASPTAA-EVVDAAANTAGGLDGSSGEGRE----GGERLADGVGLGAVPGAVPGGVVEERAVNGGASSSKVQQQRKWLPPRAPEVSRKEMIEAKKLSSKASGLMRRMTTAGKNGSWREVMPLLDEMLSLGVVADGRPYTVAIKAL 243
            G  PQQC ++ ASG   V        ++ NTLLL+HPA G  L +Q Q +RRHVRSRPRG TS+ L LT+ S      HC R   +  G+G  RG     GALRTAASPT   +V+DAAA T     G  GE RE    GG   A   G+G  P  V  G     A    + +   ++ R+ LP  AP+   + ++EAKK +S A+  MRRMT AGK G WR+V+P L+EML+LG+V DGRPYTVAIKAL
Sbjct:    7 GTAPQQC-TALASGVGFVSRSTAGERASGNTLLLVHPAAGRGLQQQQQPRRRHVRSRPRGFTSSFLTLTNRSTMNRPHHCLRDGNLD-GSGAWRG---VCGALRTAASPTTTVDVIDAAAATGVERLGVEGEQRERISAGGSAAAVSDGVGESPAGVTAGSSTTDANMQNSGTRIDERSRRKLP--APDTPARLVVEAKKSTSAAAAFMRRMTEAGKRGRWRDVVPALEEMLNLGLVTDGRPYTVAIKAL 249          
BLAST of mRNA_L-elsbetiae_contig122.1829.1 vs. uniprot
Match: D7G0E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.530e-14
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 0
Query:  593 DGRWSRAGGTAGRVAIADGRRAAYNAAITVCGKAGRWNRALGLLQEMPSYGMEPDVVS 650
            DG+W RAGGTAGRVA  DGR AA NAA+T+CGKAGRW+   GLL+EMPSYG+ PDVVS
Sbjct:  414 DGKWGRAGGTAGRVAFPDGRGAASNAALTLCGKAGRWDPPRGLLEEMPSYGIMPDVVS 471          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig122.1829.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJS1_9PHAE8.360e-3746.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0E7_ECTSI1.530e-1474.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 395..457
e-value: 7.4E-7
score: 29.2
coord: 671..727
e-value: 2.1E-6
score: 27.7
coord: 220..278
e-value: 2.6E-4
score: 21.0
coord: 852..910
e-value: 2.2E-7
score: 30.8
coord: 333..384
e-value: 1.5E-10
score: 41.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 615..658
e-value: 4.7E-8
score: 33.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 758..785
e-value: 0.11
score: 12.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 831..864
e-value: 5.2E-4
score: 18.0
coord: 269..304
e-value: 1.5E-6
score: 26.0
coord: 236..268
e-value: 5.8E-5
score: 21.0
coord: 902..934
e-value: 3.8E-4
score: 18.4
coord: 615..648
e-value: 3.2E-7
score: 28.1
coord: 340..373
e-value: 3.0E-7
score: 28.2
coord: 684..717
e-value: 5.2E-7
score: 27.5
coord: 305..339
e-value: 4.1E-7
score: 27.8
coord: 411..443
e-value: 2.8E-4
score: 18.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 829..863
score: 10.293
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 443..474
score: 7.695
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 267..297
score: 9.832
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 373..407
score: 7.991
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 197..231
score: 5.667
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 338..372
score: 12.693
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 934..955
score: 6.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 792..822
score: 6.61
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 864..898
score: 10.161
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 612..646
score: 10.786
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 899..933
score: 9.58
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 232..266
score: 10.611
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 647..681
score: 9.416
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 408..442
score: 10.435
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 717..747
score: 6.84
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 682..716
score: 12.353
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 756..790
score: 8.32
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 303..337
score: 11.597
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 379..479
e-value: 3.5E-17
score: 64.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 750..823
e-value: 9.9E-14
score: 53.4
coord: 611..749
e-value: 9.9E-36
score: 125.6
coord: 199..368
e-value: 2.4E-48
score: 167.0
coord: 824..955
e-value: 1.9E-32
score: 114.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 337..473
coord: 826..951
coord: 751..849
coord: 202..349
coord: 615..772

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig122contigL-elsbetiae_contig122:3492..28959 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig122.1829.1mRNA_L-elsbetiae_contig122.1829.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig122 3492..28986 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig122.1829.1 ID=prot_L-elsbetiae_contig122.1829.1|Name=mRNA_L-elsbetiae_contig122.1829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=955bp
MSPYLPGKTPQQCVSSFASGPFRVPSASNTLLLIHPAGSSLPEQLQSQRR
HVRSRPRGATSAALALTDLSPSRHTRHCPRSSAIRVGAGRGRGGGVAWGA
LRTAASPTAAEVVDAAANTAGGLDGSSGEGREGGERLADGVGLGAVPGAV
PGGVVEERAVNGGASSSKVQQQRKWLPPRAPEVSRKEMIEAKKLSSKASG
LMRRMTTAGKNGSWREVMPLLDEMLSLGVVADGRPYTVAIKALGDNGQTA
QALELLENMRDSGIAPNEFSYTAAANACARTGDWKGALRLLDQMRERDGV
EPNEFTYTAAVTACGRGGNLQAALSLLELMRERGVFPNCYTFNSAIHACA
RKGKWQLALELMERMKADGVTPTLTTYSSAADACAKGGNCAAALKILDEV
RGLGLGVTEILYNTAMEACAAAGQTKLSLSLLETMRKDGVRPSPTTYTTA
ITACGRRAADWKRALLLLADMRKEFPSRPGPLYSSAAPATLPARGEGSGG
GGGGSSDSRRSSRSSGSEGGRGEGGQGGGGGSDAPEWLAQADAGQGGSYS
TPTGGVGGHSGSSRRNGSREASGVSGATGGVEGHSGGSDGGDDGRWSRAG
GTAGRVAIADGRRAAYNAAITVCGKAGRWNRALGLLQEMPSYGMEPDVVS
YNSAISACGYRAKWDKATGLLAEVWLAGLRPDCYSYSSAIHACAGAGRWE
EAMSLLREMESVGLGPSVVAYGAAMSALAHGKQWKLALELLDEVCSHPKG
SKIQPNAVLYGAAIRACSRAGQWRIGVELLESMHSASGVMPSLVCFNAAL
HGMAIAGEGKKARDLVETMQRGPRSTRPDTYSYNSAIAACGLGGEADEAR
ALLEAMQQRGTQADVFSFNGVMQANVEGGNWATALEVLEEIRTKGLDPDV
ASFNIAVHACSVGRQWQAAIDLLEEMSEAGLAMDAFTYSHAIEACCNGGN
RVSAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf