mRNA_L-elsbetiae_contig122.1829.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig122.1829.1 vs. uniprot
Match: A0A6H5KJS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS1_9PHAE) HSP 1 Score: 153 bits (386), Expect = 8.500e-37 Identity = 117/250 (46.80%), Postives = 147/250 (58.80%), Query Frame = 1 Query: 46 GKTPQQCVSSFASGPFRVP-------SASNTLLLIHPA-GSSLPEQLQSQRRHVRSRPRGATSAALALTDLSPSRHTRHCPRSSAIRVGAGRGRGGGVAWGALRTAASPTAA-EVVDAAANTAGGLDGSSGEGRE----GGERLADGVGLGAVPGAVPGGVVEERAVNGGASSSKVQQQRKWLPPRAPEVSRKEMIEAKKLSSKASGLMRRMTTAGKNGSWREVMPLLDEMLSLGVVADGRPYTVAIKAL 756 G PQQC ++ ASG V ++ NTLLL+HPA G L +Q Q +RRHVRSRPRG TS+ L LT+ S HC R + G+G RG GALRTAASPT +V+DAAA T G GE RE GG A G+G P V G A + + ++ R+ LP AP+ + ++EAKK +S A+ MRRMT AGK G WR+V+P L+EML+LG+V DGRPYTVAIKAL Sbjct: 7 GTAPQQC-TALASGVGFVSRSTAGERASGNTLLLVHPAAGRGLQQQQQPRRRHVRSRPRGFTSSFLTLTNRSTMNRPHHCLRDGNLD-GSGAWRG---VCGALRTAASPTTTVDVIDAAAATGVERLGVEGEQRERISAGGSAAAVSDGVGESPAGVTAGSSTTDANMQNSGTRIDERSRRKLP--APDTPARLVVEAKKSTSAAAAFMRRMTEAGKRGRWRDVVPALEEMLNLGLVTDGRPYTVAIKAL 249
BLAST of mRNA_L-elsbetiae_contig122.1829.1 vs. uniprot
Match: D7G0E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E7_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 1.560e-14 Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1 Query: 1804 DGRWSRAGGTAGRVAIADGRRAAYNAAITVCGKAGRWNRALGLLQEMPSYGMEPDVVS 1977 DG+W RAGGTAGRVA DGR AA NAA+T+CGKAGRW+ GLL+EMPSYG+ PDVVS Sbjct: 414 DGKWGRAGGTAGRVAFPDGRGAASNAALTLCGKAGRWDPPRGLLEEMPSYGIMPDVVS 471 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig122.1829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig122.1829.1 >prot_L-elsbetiae_contig122.1829.1 ID=prot_L-elsbetiae_contig122.1829.1|Name=mRNA_L-elsbetiae_contig122.1829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=955bp MSPYLPGKTPQQCVSSFASGPFRVPSASNTLLLIHPAGSSLPEQLQSQRRback to top mRNA from alignment at L-elsbetiae_contig122:3492..28986- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig122.1829.1 ID=mRNA_L-elsbetiae_contig122.1829.1|Name=mRNA_L-elsbetiae_contig122.1829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=25495bp|location=Sequence derived from alignment at L-elsbetiae_contig122:3492..28986- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig122:3492..28986- >mRNA_L-elsbetiae_contig122.1829.1 ID=mRNA_L-elsbetiae_contig122.1829.1|Name=mRNA_L-elsbetiae_contig122.1829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5730bp|location=Sequence derived from alignment at L-elsbetiae_contig122:3492..28986- (Laminarionema elsbetiae ELsaHSoW15)back to top |