prot_L-elsbetiae_contig1218.1811.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1218.1811.1
Unique Nameprot_L-elsbetiae_contig1218.1811.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1073
Homology
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 595 bits (1535), Expect = 6.750e-194
Identity = 419/923 (45.40%), Postives = 496/923 (53.74%), Query Frame = 0
Query:   93 LSLPWLADRFYLNVLASLR----GGQQSDGRLARDSGGGCSXXXXXXXXXXXXXGVDTGGYAEGE-YANGPFFSLERLVEVVSGDDWPDIKAALFGTFSLEIGRVAEEIPSLFSTTNRTIPVLVLHGDKSLLRRRLHPEEKEEDEKGHMGXXXXXXXXXXXXXXXXXGERGVEGQGGQRSEDYFLWRKGYSGNPSRDLRERHEAAGRLDRLLGWKMRMPDQVQVEKVDTGTMGVHHPKFGLLFLKDGSLVVYVSTGNMGVDTAVDATWVQRFGRREEITCCDGEGETGRRKPSGDGEGCXXXXXXXXGGPAVWEGDFADTLQGFLQEESRLMEAEAKRPGKHGTRDVKRVLQNTPESFLLRELGIRHLGDNFDFTTATVDLIPAAPFRFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPPLVPLRALPLPPANTGSPVSDGGGEGRL--AGGEXXXXXXXXXRGRELGASFGAVVARCDDGEGRAEPNNAPDSGRGGEAGSGGPKGEARGFTQEDETVATXXXXXXXXXXXXXXXXXXATALSRFG-QLRLRHVLSKRRWQIGEKMGPEDLLILQPTSIGAGIDAGFIEVVAKNLMPDSVEPLRGDRWKDSRVNSVRIVWPSAQYIDFCREDMSESKFLRDRQSATTMEVDHAYVMGQTEKRAEDDGNGFVFMSPDVFDSMGSDLHACLHTFQLHPATAVALPPRPAHIKSAMRLRRAPAPLIQQEPQVQQXXXXXXXXXXXXRWTPASEKDDNVCGARGRSRGGRPSGRAAEDGSARCCSDDDNADCCGGLCC--EDLDVDGDED-DGD---VCEHAQHFAWFLLTSACLSKGAQGEVT-HCTRTG---AASGVELKNVELGVLFHSSPHRAYHAPPPPDCACRSC 997
            LSLPWLADRFYLNV+ ++R     GQ  D ++++D+                    D GG + G  YANGPFFSLERLV+VVSG   P IKAA+FGT SL+IGR+AEEIPSLFS +N T+PVLVLHG+KSL R R    E     +G   XXXXXX           G             DY L+R+    N S + RER +AAGR DRL  W+M MP  VQVEKV TG +GVHHPKFGLLFLKD SLVVYV TGN+GVDTA+DATWVQRFG+  +     GE    R   +G              G + W+GDF  TLQ FL   SRLM  +  +  K GT   +R L+NTP  F+LRELGI  LGD+FDF TA VDL+P  P                                                                  + P + PL  LP+           GGG GRL  A G             +  A   A  +R DD        +APD             G ARG    +   A                    T L  +G QLR++++LSKRR Q+ E+ GPEDLLILQPTSIGAGIDAGF+E+ AKNLMPDS  PLRG  WK+SR++SVRIVWPS QY+  CR++MS+S  LRDRQ++T MEVDH YVMG+  K  + D NGFVFMSPD FD MG DLH CL TFQLHPATA+ALP RPAH+KS MRLR+AP  L  Q P  Q+             +TP   K+ N C      RGG  +   +   +    +D                 DV GD   DG    VC + QHF+WFLLTSACLSKGAQGEV  H  RTG   AA G   KNVELGVLFHSSP RAY+  P PDCAC SC
Sbjct:   46 LSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTN-------VKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGKGGPGIKAAIFGTMSLQIGRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRDSSAEVINTTRGEAAXXXXXXK----------GGASDYRTNSDHGADYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFGQSNK-----GEAACTRDLDNG--------------GTSEWKGDFGVTLQAFLAGYSRLMRQDPNK--KVGTATSRRRLRNTPMEFMLRELGIERLGDSFDFRTAAVDLVPTVP---------------------TPMGATLSVSLQPNSNESTCWDGGRGGGNTPVESSSRSCWQDPCLASPSMSPLPLLPVSTHQENGATRRGGG-GRLSAATGSGDGEDPDDDLDGQRAADSAATSSRADD-------FDAPDG------------GPARGAPDTEGGDAIECGGAG------------GTDLRYYGGQLRMKYLLSKRRGQV-EEAGPEDLLILQPTSIGAGIDAGFLEIFAKNLMPDSAGPLRG-AWKESRLDSVRIVWPSMQYMGACRKEMSKSTLLRDRQASTIMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLQTFQLHPATALALPLRPAHVKSVMRLRKAPFSLRPQPPSPQKQAI----------FTP--NKNTNTC-----DRGGIGNSTMSHSSAEGAVADAXXXXXXXXXXXXGRTADVRGDTGCDGARPVVCTNVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAAPGAIFKNVELGVLFHSSPERAYYTAPLPDCACPSC 858          
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Match: A0A6H5KRI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI8_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 9.510e-101
Identity = 285/642 (44.39%), Postives = 332/642 (51.71%), Query Frame = 0
Query:  407 TLQGFLQEESRLMEAEAKRPGKHGTRDVKRVLQNTPESFLLRELGIRHLGDNFDFTTATVDLIPAAPF-------RFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------SEPPLVPLRALPLPPANT-GSPVSDGGGEGRL--AGGEXXXXXXXXXRGRELGASFGAVVARCDDGEGRAEPNNAPDSGRGGEAGSGGPKGEARGFTQEDETVATXXXXXXXXXXXXXXXXXXATALSRFGQLRLRHVLSKRRWQIGEKMGPEDLLILQPTSIGAGIDAGFIEVVAKNLMPDSVEPLRGDRWKDSRVNSVRIVWPSAQYIDFCREDMSESKFLRDRQSATTMEVDHAYVMGQTEKRAEDDGNGFVFMSPDVFDSMGSDLHACLHTFQLHPATAVALPPRPAHIKSAMRLRRAPAPLIQQEPQVQQXXXXXXXXXXXXRWTPASEKDDNVCGARGRSRGGRPSGRAAEDGSARCCSDDDNADCCGGLCCEDLDVDGDED-DGD---VCEHAQHFAWFLLTSACLSK------GAQGEVT-HCTRTG---AASGVELKNVELGVLFHSSPHRAYHAPPPPDCACRSC 997
            TLQ FL E SRLM  + K   K  T   +R L+NTP  F+LRELG+  LGD+FDF+TA VDL+P  P        R  P     XXXXXXXXXXXXXXXXXXXXXX                                                             + P + PL  LP+   N             RL  A G             + GA    + +R DD        ++PD    G+   GGP  +     + D    T                         GQLR++++LSKRR Q+ E+ GPED+LILQPTSIGAGIDAGF+E+ AKNLMPDS  PLRG  WK+SR++SVRIVWPS QY+D CR++MS+S  LRDRQ +TTMEVDH YVMG+  K  + D NGFVFMSPD FD MG DLH CL TFQLHPATA+ALP RPAH+KSAMRLR+AP PL  Q P  Q+                A  K+ N C  RG       S  +AE   A             G      DV GD   DG    VC + QHF+WFLLTSACLSK      GAQGEV  H  RTG   AASG   KNVELGVLFHSSP RAYH  P PDCAC +C
Sbjct:    8 TLQAFLAEYSRLMRQDPKT--KDETATSRRKLRNTPIEFMLRELGVERLGDSFDFSTAAVDLVPTVPTPMGATLARVRPWERPPXXXXXXXXXXXXXXXXXXXXXXSAPALAVAADANAIGGCGGDVNRSVSLQPNSNESICWERGRGGGSTPVESSSRYCWQDPCPASPSMSPLPLLPVRRRNAPXGXXXXXXXXXRLCAATGSRDGNDWDDDLEGQRGADSADMSSRADD-------FDSPD----GDPARGGPDTKGGDAVECDRAGGTDLRCYG-------------------GQLRMKYLLSKRRSQV-EEAGPEDVLILQPTSIGAGIDAGFLEIFAKNLMPDSAGPLRG-AWKESRLDSVRIVWPSMQYMDACRKEMSKSTLLRDRQVSTTMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLRTFQLHPATALALPLRPAHVKSAMRLRKAPFPLRPQLPSPQKQAIF------------APNKNTNTCD-RGGIGNSAMSHSSAEGAVAXXXXXXXXXYAAAGRT---ADVRGDTGCDGARPVVCANVQHFSWFLLTSACLSKAPSRAAGAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPAC 599          
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Match: K0TAQ0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAQ0_THAOC)

HSP 1 Score: 59.3 bits (142), Expect = 4.730e-5
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  309 VQVEKVDTGT--MGVHHPKFGLLFLKDGSLVVYVSTGNMGVDTAVDATWVQRFGRRE 363
            V+++  DT    +GV+HPKF LLF KDGSL V +ST N+   TA++ +WVQRF  +E
Sbjct: 1013 VKIQNKDTTPVQLGVNHPKFFLLFEKDGSLTVIISTSNLTSTTAIEGSWVQRFKPKE 1069          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FP39_ECTSI6.750e-19445.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRI8_9PHAE9.510e-10144.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0TAQ0_THAOC4.730e-550.88Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027415Tyrosyl-DNA phosphodiesterase, C-terminalGENE3D3.30.870.20coord: 925..995
e-value: 3.1E-5
score: 25.6
IPR010347Tyrosyl-DNA phosphodiesterase IPFAMPF06087Tyr-DNA_phosphocoord: 932..979
e-value: 8.3E-6
score: 24.9
IPR010347Tyrosyl-DNA phosphodiesterase IPANTHERPTHR12415TYROSYL-DNA PHOSPHODIESTERASE 1coord: 175..747
coord: 931..985
NoneNo IPR availableSUPERFAMILY56024Phospholipase D/nucleasecoord: 661..763

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1218contigL-elsbetiae_contig1218:3915..16431 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1218.1811.1mRNA_L-elsbetiae_contig1218.1811.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1218 3913..16431 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1218.1811.1 ID=prot_L-elsbetiae_contig1218.1811.1|Name=mRNA_L-elsbetiae_contig1218.1811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1073bp
SRAAQASGWWVRAVMVDSVSASPVGPITCIPEAASLKRPRAAAGAESLRR
ERHNGGRHTEMPMLESARAANTSTPQYQQHNSGSDDDGGGGGLSLPWLAD
RFYLNVLASLRGGQQSDGRLARDSGGGCSGGCSSGSSNSSSNGVDTGGYA
EGEYANGPFFSLERLVEVVSGDDWPDIKAALFGTFSLEIGRVAEEIPSLF
STTNRTIPVLVLHGDKSLLRRRLHPEEKEEDEKGHMGEEEKEEEEEEEEE
GEGNGERGVEGQGGQRSEDYFLWRKGYSGNPSRDLRERHEAAGRLDRLLG
WKMRMPDQVQVEKVDTGTMGVHHPKFGLLFLKDGSLVVYVSTGNMGVDTA
VDATWVQRFGRREEITCCDGEGETGRRKPSGDGEGCGGGNGGDGGGPAVW
EGDFADTLQGFLQEESRLMEAEAKRPGKHGTRDVKRVLQNTPESFLLREL
GIRHLGDNFDFTTATVDLIPAAPFRFFPPPQQRRRRLQQQLQLQRHKRKR
RRASSPSSLEENGGAAERGAPAAPTAAAAVAASLASRRRSEPPLVPLRAL
PLPPANTGSPVSDGGGEGRLAGGERRGGGGGGGRGRELGASFGAVVARCD
DGEGRAEPNNAPDSGRGGEAGSGGPKGEARGFTQEDETVATAAAAAAAAA
AELAEAAATATALSRFGQLRLRHVLSKRRWQIGEKMGPEDLLILQPTSIG
AGIDAGFIEVVAKNLMPDSVEPLRGDRWKDSRVNSVRIVWPSAQYIDFCR
EDMSESKFLRDRQSATTMEVDHAYVMGQTEKRAEDDGNGFVFMSPDVFDS
MGSDLHACLHTFQLHPATAVALPPRPAHIKSAMRLRRAPAPLIQQEPQVQ
QAQQQQTQQQRQQRWTPASEKDDNVCGARGRSRGGRPSGRAAEDGSARCC
SDDDNADCCGGLCCEDLDVDGDEDDGDVCEHAQHFAWFLLTSACLSKGAQ
GEVTHCTRTGAASGVELKNVELGVLFHSSPHRAYHAPPPPDCACRSCCRR
RNRRHRLHLRRDRGLGVREPLPPPPPEVAQAGAADCSRGNLFEKQGLADE
AAAAAAAAAAAAAAAPSIGSVAG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027415TDP_C
IPR010347Tdp1