mRNA_L-elsbetiae_contig1218.1811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI) HSP 1 Score: 595 bits (1535), Expect = 6.750e-194 Identity = 419/923 (45.40%), Postives = 496/923 (53.74%), Query Frame = 1
Query: 277 LSLPWLADRFYLNVLASLR----GGQQSDGRLARDSGGGCSXXXXXXXXXXXXXGVDTGGYAEGE-YANGPFFSLERLVEVVSGDDWPDIKAALFGTFSLEIGRVAEEIPSLFSTTNRTIPVLVLHGDKSLLRRRLHPEEKEEDEKGHMGXXXXXXXXXXXXXXXXXGERGVEGQGGQRSEDYFLWRKGYSGNPSRDLRERHEAAGRLDRLLGWKMRMPDQVQVEKVDTGTMGVHHPKFGLLFLKDGSLVVYVSTGNMGVDTAVDATWVQRFGRREEITCCDGEGETGRRKPSGDGEGCXXXXXXXXGGPAVWEGDFADTLQGFLQEESRLMEAEAKRPGKHGTRDVKRVLQNTPESFLLRELGIRHLGDNFDFTTATVDLIPAAPFRFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPPLVPLRALPLPPANTGSPVSDGGGEGRL--AGGEXXXXXXXXXRGRELGASFGAVVARCDDGEGRAEPNNAPDSGRGGEAGSGGPKGEARGFTQEDETVATXXXXXXXXXXXXXXXXXXATALSRFG-QLRLRHVLSKRRWQIGEKMGPEDLLILQPTSIGAGIDAGFIEVVAKNLMPDSVEPLRGDRWKDSRVNSVRIVWPSAQYIDFCREDMSESKFLRDRQSATTMEVDHAYVMGQTEKRAEDDGNGFVFMSPDVFDSMGSDLHACLHTFQLHPATAVALPPRPAHIKSAMRLRRAPAPLIQQEPQVQQXXXXXXXXXXXXRWTPASEKDDNVCGARGRSRGGRPSGRAAEDGSARCCSDDDNADCCGGLCC--EDLDVDGDED-DGD---VCEHAQHFAWFLLTSACLSKGAQGEVT-HCTRTG---AASGVELKNVELGVLFHSSPHRAYHAPPPPDCACRSC 2991
LSLPWLADRFYLNV+ ++R GQ D ++++D+ D GG + G YANGPFFSLERLV+VVSG P IKAA+FGT SL+IGR+AEEIPSLFS +N T+PVLVLHG+KSL R R E +G XXXXXX G DY L+R+ N S + RER +AAGR DRL W+M MP VQVEKV TG +GVHHPKFGLLFLKD SLVVYV TGN+GVDTA+DATWVQRFG+ + GE R +G G + W+GDF TLQ FL SRLM + + K GT +R L+NTP F+LRELGI LGD+FDF TA VDL+P P + P + PL LP+ GGG GRL A G + A A +R DD +APD G ARG + A T L +G QLR++++LSKRR Q+ E+ GPEDLLILQPTSIGAGIDAGF+E+ AKNLMPDS PLRG WK+SR++SVRIVWPS QY+ CR++MS+S LRDRQ++T MEVDH YVMG+ K + D NGFVFMSPD FD MG DLH CL TFQLHPATA+ALP RPAH+KS MRLR+AP L Q P Q+ +TP K+ N C RGG + + + +D DV GD DG VC + QHF+WFLLTSACLSKGAQGEV H RTG AA G KNVELGVLFHSSP RAY+ P PDCAC SC
Sbjct: 46 LSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTN-------VKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGKGGPGIKAAIFGTMSLQIGRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRDSSAEVINTTRGEAAXXXXXXK----------GGASDYRTNSDHGADYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATWVQRFGQSNK-----GEAACTRDLDNG--------------GTSEWKGDFGVTLQAFLAGYSRLMRQDPNK--KVGTATSRRRLRNTPMEFMLRELGIERLGDSFDFRTAAVDLVPTVP---------------------TPMGATLSVSLQPNSNESTCWDGGRGGGNTPVESSSRSCWQDPCLASPSMSPLPLLPVSTHQENGATRRGGG-GRLSAATGSGDGEDPDDDLDGQRAADSAATSSRADD-------FDAPDG------------GPARGAPDTEGGDAIECGGAG------------GTDLRYYGGQLRMKYLLSKRRGQV-EEAGPEDLLILQPTSIGAGIDAGFLEIFAKNLMPDSAGPLRG-AWKESRLDSVRIVWPSMQYMGACRKEMSKSTLLRDRQASTIMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLQTFQLHPATALALPLRPAHVKSVMRLRKAPFSLRPQPPSPQKQAI----------FTP--NKNTNTC-----DRGGIGNSTMSHSSAEGAVADAXXXXXXXXXXXXGRTADVRGDTGCDGARPVVCTNVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAAPGAIFKNVELGVLFHSSPERAYYTAPLPDCACPSC 858
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Match: A0A6H5KRI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI8_9PHAE) HSP 1 Score: 342 bits (878), Expect = 9.510e-101 Identity = 285/642 (44.39%), Postives = 332/642 (51.71%), Query Frame = 1
Query: 1219 TLQGFLQEESRLMEAEAKRPGKHGTRDVKRVLQNTPESFLLRELGIRHLGDNFDFTTATVDLIPAAPF-------RFFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------SEPPLVPLRALPLPPANT-GSPVSDGGGEGRL--AGGEXXXXXXXXXRGRELGASFGAVVARCDDGEGRAEPNNAPDSGRGGEAGSGGPKGEARGFTQEDETVATXXXXXXXXXXXXXXXXXXATALSRFGQLRLRHVLSKRRWQIGEKMGPEDLLILQPTSIGAGIDAGFIEVVAKNLMPDSVEPLRGDRWKDSRVNSVRIVWPSAQYIDFCREDMSESKFLRDRQSATTMEVDHAYVMGQTEKRAEDDGNGFVFMSPDVFDSMGSDLHACLHTFQLHPATAVALPPRPAHIKSAMRLRRAPAPLIQQEPQVQQXXXXXXXXXXXXRWTPASEKDDNVCGARGRSRGGRPSGRAAEDGSARCCSDDDNADCCGGLCCEDLDVDGDED-DGD---VCEHAQHFAWFLLTSACLSK------GAQGEVT-HCTRTG---AASGVELKNVELGVLFHSSPHRAYHAPPPPDCACRSC 2991
TLQ FL E SRLM + K K T +R L+NTP F+LRELG+ LGD+FDF+TA VDL+P P R P XXXXXXXXXXXXXXXXXXXXXX + P + PL LP+ N RL A G + GA + +R DD ++PD G+ GGP + + D T GQLR++++LSKRR Q+ E+ GPED+LILQPTSIGAGIDAGF+E+ AKNLMPDS PLRG WK+SR++SVRIVWPS QY+D CR++MS+S LRDRQ +TTMEVDH YVMG+ K + D NGFVFMSPD FD MG DLH CL TFQLHPATA+ALP RPAH+KSAMRLR+AP PL Q P Q+ A K+ N C RG S +AE A G DV GD DG VC + QHF+WFLLTSACLSK GAQGEV H RTG AASG KNVELGVLFHSSP RAYH P PDCAC +C
Sbjct: 8 TLQAFLAEYSRLMRQDPKT--KDETATSRRKLRNTPIEFMLRELGVERLGDSFDFSTAAVDLVPTVPTPMGATLARVRPWERPPXXXXXXXXXXXXXXXXXXXXXXSAPALAVAADANAIGGCGGDVNRSVSLQPNSNESICWERGRGGGSTPVESSSRYCWQDPCPASPSMSPLPLLPVRRRNAPXGXXXXXXXXXRLCAATGSRDGNDWDDDLEGQRGADSADMSSRADD-------FDSPD----GDPARGGPDTKGGDAVECDRAGGTDLRCYG-------------------GQLRMKYLLSKRRSQV-EEAGPEDVLILQPTSIGAGIDAGFLEIFAKNLMPDSAGPLRG-AWKESRLDSVRIVWPSMQYMDACRKEMSKSTLLRDRQVSTTMEVDHKYVMGEDGKTPDWDNNGFVFMSPDQFDGMGLDLHCCLRTFQLHPATALALPLRPAHVKSAMRLRKAPFPLRPQLPSPQKQAIF------------APNKNTNTCD-RGGIGNSAMSHSSAEGAVAXXXXXXXXXYAAAGRT---ADVRGDTGCDGARPVVCANVQHFSWFLLTSACLSKAPSRAAGAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPAC 599
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Match: K0TAQ0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAQ0_THAOC) HSP 1 Score: 59.3 bits (142), Expect = 4.730e-5 Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 925 VQVEKVDTGT--MGVHHPKFGLLFLKDGSLVVYVSTGNMGVDTAVDATWVQRFGRRE 1089
V+++ DT +GV+HPKF LLF KDGSL V +ST N+ TA++ +WVQRF +E
Sbjct: 1013 VKIQNKDTTPVQLGVNHPKFFLLFEKDGSLTVIISTSNLTSTTAIEGSWVQRFKPKE 1069 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1218.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1218.1811.1 >prot_L-elsbetiae_contig1218.1811.1 ID=prot_L-elsbetiae_contig1218.1811.1|Name=mRNA_L-elsbetiae_contig1218.1811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1073bp SRAAQASGWWVRAVMVDSVSASPVGPITCIPEAASLKRPRAAAGAESLRRback to top mRNA from alignment at L-elsbetiae_contig1218:3913..16431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1218.1811.1 ID=mRNA_L-elsbetiae_contig1218.1811.1|Name=mRNA_L-elsbetiae_contig1218.1811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12519bp|location=Sequence derived from alignment at L-elsbetiae_contig1218:3913..16431- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1218:3913..16431- >mRNA_L-elsbetiae_contig1218.1811.1 ID=mRNA_L-elsbetiae_contig1218.1811.1|Name=mRNA_L-elsbetiae_contig1218.1811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6438bp|location=Sequence derived from alignment at L-elsbetiae_contig1218:3913..16431- (Laminarionema elsbetiae ELsaHSoW15)back to top |