prot_L-elsbetiae_contig12044.1728.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12044.1728.1
Unique Nameprot_L-elsbetiae_contig12044.1728.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length151
Homology
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BLAST of mRNA_L-elsbetiae_contig12044.1728.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.240e-8
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:  111 LTLRVRMPDGAVKRVKATAADTVDGIMSKLGMAGGXXXXGE 151
            LTLRVRMPDGAVKRVKAT ADT+DGI+ KLGM  G    GE
Sbjct:   80 LTLRVRMPDGAVKRVKATGADTIDGILGKLGMEKGDGGSGE 120
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12044.1728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW6_ECTSI4.240e-875.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 102..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..101
NoneNo IPR availableTMHMMTMhelixcoord: 80..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12044contigL-elsbetiae_contig12044:2304..2982 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12044.1728.1mRNA_L-elsbetiae_contig12044.1728.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12044 2304..2982 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12044.1728.1 ID=prot_L-elsbetiae_contig12044.1728.1|Name=mRNA_L-elsbetiae_contig12044.1728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
PLAHPRGPRRCVVPIFGTPVSHPSSSTGMALARMETRTHERQRRQRRQRP
DHPTQPQQPTPRLPHSSSTTRRSKRRRPCATFASLSLLVAACLCLWVQGV
AGAAGPGAASLTLRVRMPDGAVKRVKATAADTVDGIMSKLGMAGGGGGGG
E
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