prot_L-elsbetiae_contig11976.1681.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11976.1681.1
Unique Nameprot_L-elsbetiae_contig11976.1681.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length95
Homology
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 8.670e-27
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 94
            MSLGS GN V+DN FN CSD+GL+TY GSD P   VS+GRP  NTF  N+VTNSAG VK K +D++V+T+N F+GT   E+EF+DAQ TTW+ N
Sbjct:  341 MSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPD--VSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTE--ELEFYDAQATTWSGN 430          
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.150e-25
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 0
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 94
            +SLGS+ N+VH+N F   S  GL+TY+GSD PT GVSDGRP  N FE N++ N    VKIK  D  VITDNVF+GT   E+EFFDAQNT W  N
Sbjct:  396 LSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTS--ELEFFDAQNTRWKGN 487          
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.620e-16
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 0
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNNE 95
            +SLGSA N +HDN+F++ S YGL+TY+GSD P    +DGR   N+F+ N ++N+  ++KIK  D    T+NVF      E E  D+ +T WTNN+
Sbjct:  733 LSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFE--DSTDTVWTNND 825          
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 9.450e-13
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 0
Query:    5 SAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 94
            + G ++H +S NA    G       D P   VS+GRP  NTF  N++TN+AG VKIK +D++VI++N F+GT   E+EFFDAQ TTW++N
Sbjct:  248 AVGIFLHRSSDNAEVYGGXXXXXXXDAPD--VSNGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTE--ELEFFDAQATTWSDN 333          
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.180e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGS--VKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 94
            +SLGS  N + +N F+  + YGL+TY GSD P    S+GRP  N F+GN +     +  V IK  DS V  DNVF+G    E E  D+ +TTW +N
Sbjct:  519 LSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFE--DSSDTTWVDN 612          
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-10
Identity = 44/96 (45.83%), Postives = 53/96 (55.21%), Query Frame = 0
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIE-IEFFDAQNTTWTNNE 95
            MSLGS  N V+ NSF   S YGL+TYEGSD P   VSDGRP  N    N V +    VKIK  D      N F    N++  EF ++ NT W+ N+
Sbjct:  771 MSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPD--VSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFI---NVDAFEFPESTNTMWSGND 861          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JGU8_9PHAE8.670e-2761.70MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRM4_ECTSI8.150e-2559.57Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FWE8_ECTSI3.620e-1645.26Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FIU4_ECTSI9.450e-1347.78Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI2.180e-1243.75Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LC73_ECTSI1.740e-1045.83Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 6..95
e-value: 8.5E-8
score: 32.2
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..95
e-value: 3.2E-5
score: 25.3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 4..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11976contigL-elsbetiae_contig11976:5292..5882 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11976.1681.1mRNA_L-elsbetiae_contig11976.1681.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11976 5292..5882 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11976.1681.1 ID=prot_L-elsbetiae_contig11976.1681.1|Name=mRNA_L-elsbetiae_contig11976.1681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQ
VTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNNE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039448Beta_helix
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence