mRNA_L-elsbetiae_contig11976.1681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11976.1681.1
Unique NamemRNA_L-elsbetiae_contig11976.1681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 8.670e-27
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 282
            MSLGS GN V+DN FN CSD+GL+TY GSD P   VS+GRP  NTF  N+VTNSAG VK K +D++V+T+N F+GT   E+EF+DAQ TTW+ N
Sbjct:  341 MSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPD--VSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTE--ELEFYDAQATTWSGN 430
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BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.150e-25
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 282
            +SLGS+ N+VH+N F   S  GL+TY+GSD PT GVSDGRP  N FE N++ N    VKIK  D  VITDNVF+GT   E+EFFDAQNT W  N
Sbjct:  396 LSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTS--ELEFFDAQNTRWKGN 487
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BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.620e-16
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNNE 285
            +SLGSA N +HDN+F++ S YGL+TY+GSD P    +DGR   N+F+ N ++N+  ++KIK  D    T+NVF      E E  D+ +T WTNN+
Sbjct:  733 LSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFE--DSTDTVWTNND 825
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BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 9.450e-13
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   13 SAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 282
            + G ++H +S NA    G       D P   VS+GRP  NTF  N++TN+AG VKIK +D++VI++N F+GT   E+EFFDAQ TTW++N
Sbjct:  248 AVGIFLHRSSDNAEVYGGXXXXXXXDAPD--VSNGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTE--ELEFFDAQATTWSDN 333
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BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.180e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGS--VKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNN 282
            +SLGS  N + +N F+  + YGL+TY GSD P    S+GRP  N F+GN +     +  V IK  DS V  DNVF+G    E E  D+ +TTW +N
Sbjct:  519 LSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFE--DSSDTTWVDN 612
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BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-10
Identity = 44/96 (45.83%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQVTNSAGSVKIKYTDSMVITDNVFSGTPNIE-IEFFDAQNTTWTNNE 285
            MSLGS  N V+ NSF   S YGL+TYEGSD P   VSDGRP  N    N V +    VKIK  D      N F    N++  EF ++ NT W+ N+
Sbjct:  771 MSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPD--VSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFI---NVDAFEFPESTNTMWSGND 861
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11976.1681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JGU8_9PHAE8.670e-2761.70MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRM4_ECTSI8.150e-2559.57Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FWE8_ECTSI3.620e-1645.26Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FIU4_ECTSI9.450e-1347.78Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI2.180e-1243.75Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LC73_ECTSI1.740e-1045.83Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11976contigL-elsbetiae_contig11976:5292..5882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.0539393-CDS-L-elsbetiae_contig11976:5291..53681622815397.0539393-CDS-L-elsbetiae_contig11976:5291..5368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11976 5292..5368 -
1691682878.2172751-CDS-L-elsbetiae_contig11976:5291..53681691682878.2172751-CDS-L-elsbetiae_contig11976:5291..5368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11976 5292..5368 -
1622815397.0655801-CDS-L-elsbetiae_contig11976:5674..58821622815397.0655801-CDS-L-elsbetiae_contig11976:5674..5882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11976 5675..5882 -
1691682878.232387-CDS-L-elsbetiae_contig11976:5674..58821691682878.232387-CDS-L-elsbetiae_contig11976:5674..5882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11976 5675..5882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11976.1681.1prot_L-elsbetiae_contig11976.1681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11976 5292..5882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11976.1681.1

>prot_L-elsbetiae_contig11976.1681.1 ID=prot_L-elsbetiae_contig11976.1681.1|Name=mRNA_L-elsbetiae_contig11976.1681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MSLGSAGNYVHDNSFNACSDYGLFTYEGSDPPTGGVSDGRPFFNTFEGNQ
VTNSAGSVKIKYTDSMVITDNVFSGTPNIEIEFFDAQNTTWTNNE
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mRNA from alignment at L-elsbetiae_contig11976:5292..5882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11976.1681.1 ID=mRNA_L-elsbetiae_contig11976.1681.1|Name=mRNA_L-elsbetiae_contig11976.1681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=591bp|location=Sequence derived from alignment at L-elsbetiae_contig11976:5292..5882- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCTGGGCTCTGCCGGCAACTACGTGCACGACAACTCCTTCAACGC
CTGCTCCGACTACGGCCTGTTCACGTACGAGGGGTCCGACCCGCCGACCG
GGGGAGTCAGCGACGGGCGTCCATTCTTCAACACGTTCGAAGGCAACCAG
GTCACCAACTCCGCAGGCTCCGTCAAGATCAAGTACACCGACAGTATGGT
CATCACGGGTGAGTTTCGTTTTACTGCCCGACGCCGAACAGGCACAACGG
CGGAGATTCTCGATCTGCGTCGAGATGCACGGCACATATAGTACGCCGCT
GCTGTCCGTGGTACTAGTCGGGCCATCTGTTGAATGAGCCCACACGCCAC
CTTGTAACGCATTGGTACACCCAACACGAGCTACGCTTCTGCAGCGCGCC
CATTGCATATGCCGGACTTTGGAAGACGTTATCACCGAAATCGCTGATGA
CCTGCTACTCTTTTGCGCTTGTATGTTCTTGTTTTGCATGTAATTTCGGC
GTCCCTCTGTGCAGACAACGTGTTTTCCGGAACGCCCAACATCGAGATTG
AGTTCTTTGATGCTCAGAATACGACGTGGACGAACAACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11976:5292..5882-

>mRNA_L-elsbetiae_contig11976.1681.1 ID=mRNA_L-elsbetiae_contig11976.1681.1|Name=mRNA_L-elsbetiae_contig11976.1681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig11976:5292..5882- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCTGGGCTCTGCCGGCAACTACGTGCACGACAACTCCTTCAACGC
CTGCTCCGACTACGGCCTGTTCACGTACGAGGGGTCCGACCCGCCGACCG
GGGGAGTCAGCGACGGGCGTCCATTCTTCAACACGTTCGAAGGCAACCAG
GTCACCAACTCCGCAGGCTCCGTCAAGATCAAGTACACCGACAGTATGGT
CATCACGGATGAGCCTGGGCTCTGCCGGCAACTACGTGCACGACAACTCC
TTCAACGCCTGCTCCGACTACGGCCTGTTCACGTACGAGGGGTCCGACCC
GCCGACCGGGGGAGTCAGCGACGGGCGTCCATTCTTCAACACGTTCGAAG
GCAACCAGGTCACCAACTCCGCAGGCTCCGTCAAGATCAAGTACACCGAC
AGTATGGTCATCACGGACAACGTGTTTTCCGGAACGCCCAACATCGAGAT
TGAGTTCTTTGATGCTCAGAATACGACGTGGACGAACAACGAGACAACGT
GTTTTCCGGAACGCCCAACATCGAGATTGAGTTCTTTGATGCTCAGAATA
CGACGTGGACGAACAACGAG
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