prot_L-elsbetiae_contig11531.1345.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11531.1345.1
Unique Nameprot_L-elsbetiae_contig11531.1345.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length164
Homology
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BLAST of mRNA_L-elsbetiae_contig11531.1345.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.750e-6
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:  115 KKKRTRRGGWDTPAAPGAAAAVAKKGWGDAPKPVAPAVPMNPLQWL 160
            K+KRTRRGGWDTPAAPGA   V KKGWGDAP PVAP      LQ L
Sbjct:  189 KRKRTRRGGWDTPAAPGA---VVKKGWGDAP-PVAPXXXXXXLQEL 230
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11531.1345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX1_ECTSI4.750e-671.74RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11531contigL-elsbetiae_contig11531:2277..5176 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11531.1345.1mRNA_L-elsbetiae_contig11531.1345.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11531 1807..5176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11531.1345.1 ID=prot_L-elsbetiae_contig11531.1345.1|Name=mRNA_L-elsbetiae_contig11531.1345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
DGDVAKPSADDTAGADGDGGAGTDAASTSEGAPSEIAAVAGAKDPGSSLN
EDKEGAENAAAAVPAAATKAGEDESPEAVEAMAAAAIKAALAAAAEGGAG
AKEGNGTAEAAEQPKKKRTRRGGWDTPAAPGAAAAVAKKGWGDAPKPVAP
AVPMNPLQWLTLP*
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