mRNA_L-elsbetiae_contig11531.1345.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11531.1345.1
Unique NamemRNA_L-elsbetiae_contig11531.1345.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11531.1345.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.590e-5
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  343 KKKRTRRGGWDTPAAPGAAAAVAKKGWGDAPKPVAPAVPMNPLQWL 480
            K+KRTRRGGWDTPAAPGA   V KKGWGDAP PVAP      LQ L
Sbjct:  189 KRKRTRRGGWDTPAAPGA---VVKKGWGDAP-PVAPXXXXXXLQEL 230
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11531.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX1_ECTSI7.590e-571.74RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11531contigL-elsbetiae_contig11531:1807..5176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size963
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11531.1345.1prot_L-elsbetiae_contig11531.1345.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11531 2277..5176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.8705208-UTR-L-elsbetiae_contig11531:1806..22761622815359.8705208-UTR-L-elsbetiae_contig11531:1806..2276Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11531 1807..2276 -
1691682859.846745-UTR-L-elsbetiae_contig11531:1806..22761691682859.846745-UTR-L-elsbetiae_contig11531:1806..2276Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11531 1807..2276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.8817613-CDS-L-elsbetiae_contig11531:2276..22941622815359.8817613-CDS-L-elsbetiae_contig11531:2276..2294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 2277..2294 -
1691682859.856468-CDS-L-elsbetiae_contig11531:2276..22941691682859.856468-CDS-L-elsbetiae_contig11531:2276..2294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 2277..2294 -
1622815359.8924227-CDS-L-elsbetiae_contig11531:4702..51761622815359.8924227-CDS-L-elsbetiae_contig11531:4702..5176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 4703..5176 -
1691682859.866766-CDS-L-elsbetiae_contig11531:4702..51761691682859.866766-CDS-L-elsbetiae_contig11531:4702..5176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11531 4703..5176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11531.1345.1

>prot_L-elsbetiae_contig11531.1345.1 ID=prot_L-elsbetiae_contig11531.1345.1|Name=mRNA_L-elsbetiae_contig11531.1345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
DGDVAKPSADDTAGADGDGGAGTDAASTSEGAPSEIAAVAGAKDPGSSLN
EDKEGAENAAAAVPAAATKAGEDESPEAVEAMAAAAIKAALAAAAEGGAG
AKEGNGTAEAAEQPKKKRTRRGGWDTPAAPGAAAAVAKKGWGDAPKPVAP
AVPMNPLQWLTLP*
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mRNA from alignment at L-elsbetiae_contig11531:1807..5176-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11531.1345.1 ID=mRNA_L-elsbetiae_contig11531.1345.1|Name=mRNA_L-elsbetiae_contig11531.1345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3370bp|location=Sequence derived from alignment at L-elsbetiae_contig11531:1807..5176- (Laminarionema elsbetiae ELsaHSoW15)
GATGGCGATGTTGCCAAGCCTTCAGCCGACGACACCGCTGGCGCGGATGG
AGATGGCGGTGCCGGCACAGACGCTGCTTCTACTTCGGAAGGCGCTCCTT
CCGAAATAGCCGCCGTAGCCGGTGCCAAAGACCCAGGATCCTCTCTCAAC
GAAGACAAAGAAGGTGCCGAAAACGCGGCGGCGGCAGTTCCTGCGGCTGC
AACCAAGGCTGGCGAGGATGAGAGCCCTGAAGCCGTTGAAGCCATGGCTG
CGGCGGCAATAAAGGCGGCCTTGGCGGCGGCGGCCGAGGGTGGAGCAGGA
GCAAAAGAGGGCAACGGTACTGCTGAAGCCGCTGAGCAGCCGAAGAAGAA
GCGCACCAGGAGAGGTGGGTGGGATACGCCTGCCGCTCCCGGCGCTGCTG
CCGCTGTGGCCAAGAAGGGGTGGGGGGATGCGCCCAAGCCCGTGGCGCCT
GCTGTGCCTATGAACCCGTTGCAGGTGAGGGTGTGGTACATAATGGCGTT
ATGTTTTGCCATTGTCGCCCCTTCACAACCACGGGCCTAACTGCTGTCCG
AGGGGCTCCGCGGATGCGCCAAAGACGAGCCAGCTTAGGCCGGTTCCTAT
TTATGGTATCAGAAAAGTGGGTAGGACATGGTTTATGCCTGGTTCGCGGA
GAAAACCCCTTCAGAGGGCAGAAAATGCCGATGGGAAATGGTGCAACGGC
CCGAAAACGCACGGCACCACCGATTGCTTGCCCTCCTGCTCACGGATCAC
GCTCTAGCTTTCAGAGTACAAGCTCCATGTTGATGAGCATCACAGATGTC
AAGCAGAGTTTCTTTTGGTGGCCTGTGGGGCAAATGCGAATGACCAACGA
CATTTCTCATCGTTCTCAGAAAGCGTTTGTTGGGTGAGAAAATTACCTAG
TTTTCCTACAAAAAAACGGTGGTGAGAAAAGGTGCAGTCACCCGAGAAAC
ACACGCACACATCGATTCCTCGCCCTCCTGCTCATGGACTGCTCTCTATT
CTTGAGACAGTGAGCTCCATGTGACTGAGCATCATTAACCTTCAGCAGAG
TTGCCCTCGATGGCTTGTGTGGCAAATGCAAGGGACCAACGGCCAGTTCG
TCTGGAATGAAGCAGGCTTCGGAACATTTTGTTAATTGGCCTAGGGGTTT
CTCCGCGAATCAGGCATAAAACCATTTCCTACCCACTTTTCCAGAACCAT
AAGAATTGACCTTACAGCAGGCCAGGCAACTAAGGGGGTAACTATTGTGC
CACCGCAGCAATAGTGGTTAATCTATAAGGACGGTCGTTGCTTTCTTGAA
GTCTCGCTTGACGTGCGAACCACAAACATGGCCGCGCGCTTCCGCTTCAT
GAAAGGCTTACGGAAACACAGCGAAAGTCCAAGTCTAGACTACAGATACA
GCAGCGCCGCCGATGCCTCGATCGTGTACGCATGTGGAATGCATCTAACA
CACTAAAAATATGGGCATATGGTAGGAGCAGATTTAATCGTTGTTAAGGG
AGAAATAGCTGCACCTTCACACACACCCTCCGGCATTGTAGGCGGGTGTG
GAAACCACACGGCCCCCAGTTGCTCCCCTTAACAAAAGCTTTCCTATTTT
TTGTGACCGGCGTGTACACGGCTGGTTCTCTCTGTATAATATATACCTGT
TTTCCTTCTTCCGAGTTGCATGTATACCGTACTTTATGTATGTGATGTTT
GCCACCAACGGGCAGTATACCCCCAAGGGGCCCCAGTGGACTCTCGTAGG
GCGTCAATGGGCCTAATATTTTACTCCAGTATTTTTTTTTTAAGTGGCGT
CGAGTGGGCCTTTTTTTGCGACCACGAGCCCCCAAGGACGTTTTGGATCA
GAGAGGCATGCTAGAACCAACGAACCAACGACAACAGAACGCGAAGGACG
CGCACGGGACCCCCTTCCTACCGTCTCAAGACCGTCTCTCAAGCTGACAT
TTTCGGTTTTCTTCTCTTTTTGCCCGCCCTCCTTCTGTTCGTCCGTTTCT
TTTCTTTTCTCTTATCTGTGCCCTCGCTTTTGTTTCATTTGTTCCTCGAT
TTTTCTCCTGCCACCCACTCTGCTGTGTGTCTTTTTGTTTTTTTTCCTTT
TCTTCCCCGCCTCGATTGTGTGCCATTTTCCGGTCGTTCACGGCTCGATC
GATCCGTGCGCGTTTTGCCGCTCTCTCGTGTCCTGCGTCTCGCTTTTGTG
CCTGCCTCTCTCTTCTGTCTCGCTCGCCTGCCCACTCTCCTGTCCATGTG
TCTGTCCACGTGTGTGTGTGCTCTGGCCAATCTATCTGTCCCGCCGCCAT
TCCTCCCCCCTCTATGCTTTCGATGCTCTCTCTGCGTACTCCGAACCCGG
GTCTCCTCTCTCTCTCGTGTCTTCTGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTGTGCTTTCTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTT
TTTTTTTTTTTTTGTNNNNNNNNNNCTCCCCTCTCTCTTGTCTCTGTGTG
TGCCCCGGGCGCGGGCCCCCTCTCTCTCTCGTGTCTTCTGTTTTTTTTTT
TTTTCTCCTGTTATTCTCGCGCTTTCTGTTCTGCTTCTCTCTCCATTTTT
GTCTTTTTGCTTTCTGTGTCCCCTCTGGTCTCTCCCCGCTGCTTTCTGTT
GCTGTTTTTTCCTTTTTCGGGCATCTTGTCCCCCATCTACGCTTTCTCCC
ATTCCCCTACTTTTCACTCTATTTTCCATTCTGTATACCTAAATACCTCT
ATCCGCATTGGCTACTTTTGTTGGCGTCATACATACGATGGCGCCTCACG
AAAAAACGCCGTCGAACGGCTCTTTTGTGTGCCTTCCCTCTGGTTTTATT
TCAATGGCACCATTCTCTCGGTCTTGGGGTAGTGGCTTACCTTACCTTAG
AATATACCTTCCCCGCTCCGCGCTGCAGCTTGACTTGAATGCTTCTGTGG
CACATCTCAGCAACCAACGGAGTTGTCTTTCCCAGCACGTTTGAGGTGCG
GTTTGATTTTCAGGGTACTTGCTGCCTTGGCGTGTTGGGTGTTCGAAATT
GGTGTCGATAAATTACGCCCGGCGGTTCCGTTGGTGGCACAGAAGCGGCT
ATTGTAGCTGTCCATGCCACGGCGCCGGGTCCTGAATTGCACCTCCCACT
ACCATACCGTGTGCCCACCCTCGCCCCAACCCAGCTTCGGCGTAAGTACC
AAAATACACACGCGTGTCGGGGTGGGTCTCTGCTTGTACGGTTTTCCCAT
GCGTTTTTATCTGGTCTTTTTTCGTCGAAACTACAACAGGAGCTTCAGCG
AAAGCTGGCCGAGGAGCAGGTGGCGGCCGCGATGGGACAAAAGCCGTCGA
TCACCTCGGTCTCCGCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11531:1807..5176-

>mRNA_L-elsbetiae_contig11531.1345.1 ID=mRNA_L-elsbetiae_contig11531.1345.1|Name=mRNA_L-elsbetiae_contig11531.1345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig11531:1807..5176- (Laminarionema elsbetiae ELsaHSoW15)
GATGGCGATGTTGCCAAGCCTTCAGCCGACGACACCGCTGGCGCGGATGG
AGATGGCGGTGCCGGCACAGACGCTGCTTCTACTTCGGAAGGCGCTCCTT
CCGAAATAGCCGCCGTAGCCGGTGCCAAAGACCCAGGATCCTCTCTCAAC
GAAGACAAAGAAGGTGCCGAAAACGCGGCGGCGGCAGTTCCTGCGGCTGC
AACCAAGGCTGGCGAGGATGAGAGCCCTGAAGCCGTTGAAGCCATGGCTG
CGGCGGCAATAAAGGCGGCCTTGGCGGCGGCGGCCGAGGGTGGAGCAGGA
GCAAAAGAGGGCAACGGTACTGCTGAAGCCGCTGAGCAGCCGAAGAAGAA
GCGCACCAGGAGAGGTGGGTGGGATACGCCTGCCGCTCCCGGCGCTGCTG
CCGCTGTGGCCAAGAAGGGGTGGGGGGATGCGCCCAAGCCCGTGGCGCCT
GCTGTGCCTATGAACCCGTTGCAGGATGGCGATGTTGCCAAGCCTTCAGC
CGACGACACCGCTGGCGCGGATGGAGATGGCGGTGCCGGCACAGACGCTG
CTTCTACTTCGGAAGGCGCTCCTTCCGAAATAGCCGCCGTAGCCGGTGCC
AAAGACCCAGGATCCTCTCTCAACGAAGACAAAGAAGGTGCCGAAAACGC
GGCGGCGGCAGTTCCTGCGGCTGCAACCAAGGCTGGCGAGGATGAGAGCC
CTGAAGCCGTTGAAGCCATGGCTGCGGCGGCAATAAAGGCGGCCTTGGCG
GCGGCGGCCGAGGGTGGAGCAGGAGCAAAAGAGGGCAACGGTACTGCTGA
AGCCGCTGAGCAGCCGAAGAAGAAGCGCACCAGGAGAGGTGGGTGGGATA
CGCCTGCCGCTCCCGGCGCTGCTGCCGCTGTGGCCAAGAAGGGGTGGGGG
GATGCGCCCAAGCCCGTGGCGCCTGCTGTGCCTATGAACCCGTTGCAGTG
GCTTACCTTACCTTAGTGGCTTACCTTACCTTAG
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