prot_L-elsbetiae_contig1153.1341.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1153.1341.1
Unique Nameprot_L-elsbetiae_contig1153.1341.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length344
Homology
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BLAST of mRNA_L-elsbetiae_contig1153.1341.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.640e-53
Identity = 110/230 (47.83%), Postives = 122/230 (53.04%), Query Frame = 0 
Query:   97 GDPCLAPRVFDRRRARAVVEEVLPGCGGVCLVTWLHPRQRGELVCRYWKEGRSCKFSGPDCPFSHGVEVSVSDLLPDDADNGDWGAPSPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAKTSTCGAWLAGLRAGSRVLARYHDRVWYEATAEGPP---------TAGNDQLSVRFRGFEDDGPVSIPVNSSHLAPLEA 317
            G  CLAPRVFDRRRARAVVEEV     G CLVTW+HPR+ GE+VCR+WKEGRSCKFSGPDCPFSHGVEV +  LLPDD   G                                                                           +WLA LR+GSRVLA YHDRVWYEATAEGP           A +  L+VRF+GFE DGPVS+P +SSHLAPLEA
Sbjct:  101 GALCLAPRVFDRRRARAVVEEV-ESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDDGGGG--------------------------------------------------------------------------SSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAAASSMLLAVRFKGFEADGPVSVPADSSHLAPLEA 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1153.1341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE1.640e-5347.83Zinc finger CCCH-type with G patch domain-containi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableGENE3D2.30.30.1190coord: 116..174
e-value: 5.9E-7
score: 31.5
NoneNo IPR availablePANTHERPTHR46297FAMILY NOT NAMEDcoord: 65..172
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 135..163
e-value: 0.0073
score: 25.5
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 135..164
score: 12.85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1153contigL-elsbetiae_contig1153:1229..3240 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1153.1341.1mRNA_L-elsbetiae_contig1153.1341.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1153 1229..3240 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1153.1341.1 ID=prot_L-elsbetiae_contig1153.1341.1|Name=mRNA_L-elsbetiae_contig1153.1341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp
QRELEVTIDGIRQRLASLQGEGHGQAADAGAAATTSASSLPRKDDEHEEP
KLPQSWGDDDAGDSGGDSGGGPDSDGAGKNRSDRPSAAAKSRQFAAGDPC
LAPRVFDRRRARAVVEEVLPGCGGVCLVTWLHPRQRGELVCRYWKEGRSC
KFSGPDCPFSHGVEVSVSDLLPDDADNGDWGAPSPATTTPASAAVAEDDD
DDDDNDDASTAAAAWLLKDDQEDGNDDETKAAANASNGSSSSSSSTAKTS
TCGAWLAGLRAGSRVLARYHDRVWYEATAEGPPTAGNDQLSVRFRGFEDD
GPVSIPVNSSHLAPLEAGGGRVGRRRGRRQGAPGAPSEDSDNDN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH