mRNA_L-elsbetiae_contig1153.1341.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1153.1341.1
Unique NamemRNA_L-elsbetiae_contig1153.1341.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1153.1341.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.640e-53
Identity = 110/230 (47.83%), Postives = 122/230 (53.04%), Query Frame = 1 
Query:  289 GDPCLAPRVFDRRRARAVVEEVLPGCGGVCLVTWLHPRQRGELVCRYWKEGRSCKFSGPDCPFSHGVEVSVSDLLPDDADNGDWGAPSPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAKTSTCGAWLAGLRAGSRVLARYHDRVWYEATAEGPP---------TAGNDQLSVRFRGFEDDGPVSIPVNSSHLAPLEA 951
            G  CLAPRVFDRRRARAVVEEV     G CLVTW+HPR+ GE+VCR+WKEGRSCKFSGPDCPFSHGVEV +  LLPDD   G                                                                           +WLA LR+GSRVLA YHDRVWYEATAEGP           A +  L+VRF+GFE DGPVS+P +SSHLAPLEA
Sbjct:  101 GALCLAPRVFDRRRARAVVEEV-ESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDDGGGG--------------------------------------------------------------------------SSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAAASSMLLAVRFKGFEADGPVSVPADSSHLAPLEA 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1153.1341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE1.640e-5347.83Zinc finger CCCH-type with G patch domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1153contigL-elsbetiae_contig1153:1229..3240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1032
Cds size1032
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.4819973-CDS-L-elsbetiae_contig1153:1228..16661622815359.4819973-CDS-L-elsbetiae_contig1153:1228..1666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1153 1229..1666 +
1691682859.6447735-CDS-L-elsbetiae_contig1153:1228..16661691682859.6447735-CDS-L-elsbetiae_contig1153:1228..1666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1153 1229..1666 +
1622815359.549796-CDS-L-elsbetiae_contig1153:2646..32401622815359.549796-CDS-L-elsbetiae_contig1153:2646..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1153 2647..3240 +
1691682859.6553168-CDS-L-elsbetiae_contig1153:2646..32401691682859.6553168-CDS-L-elsbetiae_contig1153:2646..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1153 2647..3240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1153.1341.1prot_L-elsbetiae_contig1153.1341.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1153 1229..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1153.1341.1

>prot_L-elsbetiae_contig1153.1341.1 ID=prot_L-elsbetiae_contig1153.1341.1|Name=mRNA_L-elsbetiae_contig1153.1341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp
QRELEVTIDGIRQRLASLQGEGHGQAADAGAAATTSASSLPRKDDEHEEP
KLPQSWGDDDAGDSGGDSGGGPDSDGAGKNRSDRPSAAAKSRQFAAGDPC
LAPRVFDRRRARAVVEEVLPGCGGVCLVTWLHPRQRGELVCRYWKEGRSC
KFSGPDCPFSHGVEVSVSDLLPDDADNGDWGAPSPATTTPASAAVAEDDD
DDDDNDDASTAAAAWLLKDDQEDGNDDETKAAANASNGSSSSSSSTAKTS
TCGAWLAGLRAGSRVLARYHDRVWYEATAEGPPTAGNDQLSVRFRGFEDD
GPVSIPVNSSHLAPLEAGGGRVGRRRGRRQGAPGAPSEDSDNDN
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mRNA from alignment at L-elsbetiae_contig1153:1229..3240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1153.1341.1 ID=mRNA_L-elsbetiae_contig1153.1341.1|Name=mRNA_L-elsbetiae_contig1153.1341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2012bp|location=Sequence derived from alignment at L-elsbetiae_contig1153:1229..3240+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGAGAGCTGGAGGTCACAATCGACGGCATTCGCCAGAGGCTTGCGTC
GTTGCAGGGGGAAGGCCACGGGCAGGCGGCTGATGCCGGTGCGGCAGCCA
CCACTTCCGCCTCTTCGCTTCCCCGAAAAGACGACGAGCATGAAGAACCA
AAGCTTCCTCAGAGCTGGGGCGACGATGATGCCGGTGACAGCGGTGGCGA
TAGCGGTGGCGGGCCTGACAGCGATGGAGCAGGCAAGAACCGGTCCGATC
GTCCTTCCGCCGCTGCTAAGAGCCGACAATTCGCCGCCGGTGACCCGTGC
CTGGCCCCGCGGGTGTTCGACCGCCGCCGCGCCCGCGCTGTGGTGGAAGA
GGTGCTGCCTGGGTGCGGCGGCGTCTGCCTCGTGACATGGCTGCACCCTC
GGCAGAGAGGGGAGCTCGTCTGCCGCTACTGGAAGGAGGTGAGAGTGGGT
GGCATTTGTTTGTCTTTTTCCCGTGGGTGATCTTCTGTTTTTTTTGTGTA
TTTTCCTGAGATTTTCTCGGTGTCAAGAGAGATCGTTGGTGAAGGGAGAG
CGGGTTGGTTTGTGCGAGGCTTGTGCGTCTTGTTTTTTTAACTCCCCACG
AGATTGCGGTGAAACTACTGCTGTGCCTACGCTATGATTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTTCTTCGCATTAAAATCCGTTCCGATCTCTCC
ACCCAGTACCTCCCTATGTCCGTACAATCCAACACTTGATGCGGTCAATT
CCCGTGGTCACAGGATAACTTATACCTAAAAAAAAAAAAAGTATACGAGA
ACAAAAATAAAAATGAGAGAAACTTTGAGAGCTTTCATCTTAGTTTTTAA
ACCAATAGGCTGGGTCTCCTCCGGTTGTCATTCGCGCACACGTTGGCTTC
ATCGTTTTGTGCACAAGCTCAAAGGCTACGACGGCGGATAGCCAACATAG
CACGTAAGGTGCCGAGACACGCTGCATGTATATCTGCGGCGGTGCTTTCC
TCGAACTGCTGGCCCGATCTACTGCAGCGCAACCTGCCAGATGACTGGCG
CGTGCTGAACACGTTTCTTTTTCGTGGTGAGGCGGGCATGGCCTGTAACA
ACACCCCAACCAACCCCTACGCGCTCGTGGTCGTGTGCCTCTTCTCCGTT
GAAAGCCCTGTCTGCTTCGGCTTCGCAACCCACCTTTCCCCAACGTTCGG
TCAAGCCGTCGCCGCCGGTGGGCTGCGTGTTGTCGTTGTTTATTGCTTTG
TCGCTGCTGCTTCTGCTGCGGCTGCTGCTGCGGCTGCTGGTGATGATCAG
TGTTGTCGCTGTGGTTCATTACTCCCTCTTCGTGGTTGTTTGTTGGTCCT
GATGTTATCCTTCCTTCGTTTGCCTTTGCTTTCCTCGCTCGGGCCGTCCG
TCCGTCCACCCACAACAGGGAAGAAGCTGCAAGTTCTCCGGCCCAGACTG
CCCCTTCTCGCACGGGGTGGAGGTCTCCGTGTCGGACCTGCTTCCCGACG
ACGCCGACAACGGCGACTGGGGAGCACCCTCGCCCGCTACAACAACCCCG
GCAAGCGCTGCGGTTGCTGAAGATGATGATGATGATGATGATAATGATGA
TGCCAGTACCGCGGCGGCGGCGTGGCTGCTCAAAGACGATCAGGAGGACG
GAAACGACGACGAGACCAAGGCGGCAGCGAACGCTTCCAACGGCAGCAGC
AGCAGCAGCAGCAGCACGGCCAAGACGAGCACGTGCGGCGCCTGGCTCGC
GGGCCTGCGTGCCGGCTCGAGAGTCCTCGCTCGCTACCACGACCGAGTGT
GGTACGAGGCCACCGCGGAGGGCCCCCCGACGGCGGGAAATGATCAACTC
TCCGTCCGCTTCCGTGGTTTCGAGGACGATGGCCCGGTGTCCATCCCGGT
CAACAGCTCCCACCTGGCGCCGCTCGAGGCCGGCGGAGGCCGAGTTGGGC
GGCGGAGGGGGCGCCGCCAAGGGGCCCCGGGGGCGCCGTCAGAAGATAGC
GACAACGACAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1153:1229..3240+

>mRNA_L-elsbetiae_contig1153.1341.1 ID=mRNA_L-elsbetiae_contig1153.1341.1|Name=mRNA_L-elsbetiae_contig1153.1341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig1153:1229..3240+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGAGAGCTGGAGGTCACAATCGACGGCATTCGCCAGAGGCTTGCGTC
GTTGCAGGGGGAAGGCCACGGGCAGGCGGCTGATGCCGGTGCGGCAGCCA
CCACTTCCGCCTCTTCGCTTCCCCGAAAAGACGACGAGCATGAAGAACCA
AAGCTTCCTCAGAGCTGGGGCGACGATGATGCCGGTGACAGCGGTGGCGA
TAGCGGTGGCGGGCCTGACAGCGATGGAGCAGGCAAGAACCGGTCCGATC
GTCCTTCCGCCGCTGCTAAGAGCCGACAATTCGCCGCCGGTGACCCGTGC
CTGGCCCCGCGGGTGTTCGACCGCCGCCGCGCCCGCGCTGTGGTGGAAGA
GGTGCTGCCTGGGTGCGGCGGCGTCTGCCTCGTGACATGGCTGCACCCTC
GGCAGAGAGGGGAGCTCGTCTGCCGCTACTGGAAGGAGCAGAGAGAGCTG
GAGGTCACAATCGACGGCATTCGCCAGAGGCTTGCGTCGTTGCAGGGGGA
AGGCCACGGGCAGGCGGCTGATGCCGGTGCGGCAGCCACCACTTCCGCCT
CTTCGCTTCCCCGAAAAGACGACGAGCATGAAGAACCAAAGCTTCCTCAG
AGCTGGGGCGACGATGATGCCGGTGACAGCGGTGGCGATAGCGGTGGCGG
GCCTGACAGCGATGGAGCAGGCAAGAACCGGTCCGATCGTCCTTCCGCCG
CTGCTAAGAGCCGACAATTCGCCGCCGGTGACCCGTGCCTGGCCCCGCGG
GTGTTCGACCGCCGCCGCGCCCGCGCTGTGGTGGAAGAGGTGCTGCCTGG
GTGCGGCGGCGTCTGCCTCGTGACATGGCTGCACCCTCGGCAGAGAGGGG
AGCTCGTCTGCCGCTACTGGAAGGAGGGAAGAAGCTGCAAGTTCTCCGGC
CCAGACTGCCCCTTCTCGCACGGGGTGGAGGTCTCCGTGTCGGACCTGCT
TCCCGACGACGCCGACAACGGCGACTGGGGAGCACCCTCGCCCGCTACAA
CAACCCCGGCAAGCGCTGCGGTTGCTGAAGATGATGATGATGATGATGAT
AATGATGATGCCAGTACCGCGGCGGCGGCGTGGCTGCTCAAAGACGATCA
GGAGGACGGAAACGACGACGAGACCAAGGCGGCAGCGAACGCTTCCAACG
GCAGCAGCAGCAGCAGCAGCAGCACGGCCAAGACGAGCACGTGCGGCGCC
TGGCTCGCGGGCCTGCGTGCCGGCTCGAGAGTCCTCGCTCGCTACCACGA
CCGAGTGTGGTACGAGGCCACCGCGGAGGGCCCCCCGACGGCGGGAAATG
ATCAACTCTCCGTCCGCTTCCGTGGTTTCGAGGACGATGGCCCGGTGTCC
ATCCCGGTCAACAGCTCCCACCTGGCGCCGCTCGAGGCCGGCGGAGGCCG
AGTTGGGCGGCGGAGGGGGCGCCGCCAAGGGGCCCCGGGGGCGCCGTCAG
AAGATAGCGACAACGACAACGGAAGAAGCTGCAAGTTCTCCGGCCCAGAC
TGCCCCTTCTCGCACGGGGTGGAGGTCTCCGTGTCGGACCTGCTTCCCGA
CGACGCCGACAACGGCGACTGGGGAGCACCCTCGCCCGCTACAACAACCC
CGGCAAGCGCTGCGGTTGCTGAAGATGATGATGATGATGATGATAATGAT
GATGCCAGTACCGCGGCGGCGGCGTGGCTGCTCAAAGACGATCAGGAGGA
CGGAAACGACGACGAGACCAAGGCGGCAGCGAACGCTTCCAACGGCAGCA
GCAGCAGCAGCAGCAGCACGGCCAAGACGAGCACGTGCGGCGCCTGGCTC
GCGGGCCTGCGTGCCGGCTCGAGAGTCCTCGCTCGCTACCACGACCGAGT
GTGGTACGAGGCCACCGCGGAGGGCCCCCCGACGGCGGGAAATGATCAAC
TCTCCGTCCGCTTCCGTGGTTTCGAGGACGATGGCCCGGTGTCCATCCCG
GTCAACAGCTCCCACCTGGCGCCGCTCGAGGCCGGCGGAGGCCGAGTTGG
GCGGCGGAGGGGGCGCCGCCAAGGGGCCCCGGGGGCGCCGTCAGAAGATA
GCGACAACGACAAC
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