prot_L-elsbetiae_contig11401.1228.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11401.1228.1
Unique Nameprot_L-elsbetiae_contig11401.1228.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length239
Homology
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BLAST of mRNA_L-elsbetiae_contig11401.1228.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 5.220e-68
Identity = 188/238 (78.99%), Postives = 204/238 (85.71%), Query Frame = 0 
Query:    2 AQVGLPYDIVTFVNMILGFAREDRYKDVLVMFEGLEAMMAANIRDGGPPLQARNIIGHRNCYHEALKGCEVEGRWETARRILKSMHLQHMELDVVSYGAAIGXXXXXXXXXXXXXXXXEMEASEGVSGGEWRKALHLLLKMINSGVEPDTIAYNASISASANCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNILMELLDEADQFSK 239
            A+VGL YDI TFVNMILGFAREDRYKDVLVMF+GLE +++AN RDG   +Q R+  G+RNCYHE LKGCEVEG W+ ARRILKSMHLQ M++DVV+YGAAIG                EMEA + V+GGEWRKALHLLLKMINSG+EPDTIAYNASISASANCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NILMELLDEA +FSK
Sbjct:  543 AEVGLQYDIRTFVNMILGFAREDRYKDVLVMFQGLENLLSANARDG-ILVQPRSQTGYRNCYHETLKGCEVEGNWQMARRILKSMHLQSMDVDVVAYGAAIGACGRKGRWKEALEILREMEARDDVTGGEWRKALHLLLKMINSGIEPDTIAYNASISASANCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINILMELLDEAGKFSK 779
[Close]
BLAST of mRNA_L-elsbetiae_contig11401.1228.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.220e-43
Identity = 91/162 (56.17%), Postives = 105/162 (64.81%), Query Frame = 0 
Query:    2 AQVGLPYDIVTFVNMILGFAREDRYKDVLVMFEGLEAMMAANIRDGGPPLQARNIIGHRNCYHEALKGCEVEGRWETARRILKSMHLQHMELDVVSYGAAIGXXXXXXXXXXXXXXXXEMEASEGVSGG---------------EWRKALHLLLKMINSGVE 148
            A+VGL YDI TFVNMILGFAREDRYKDVLVMF+GLE++M+AN RDG   +Q  +  G+RNCYHE LKGCEVEG W+ ARRILKSMHLQ M++DVV+YGAAIG                EMEA + VS                         LLKMINSG+E
Sbjct:  723 AEVGLQYDIRTFVNMILGFAREDRYKDVLVMFQGLESLMSANSRDG-VVVQPSSQTGYRNCYHETLKGCEVEGNWQMARRILKSMHLQSMDVDVVAYGAAIGACGRKGRWKEALEILREMEARDDVSPNVXXXXXXXXXXXXXXXXXXXXXXLLKMINSGIE 883
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11401.1228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIK7_ECTSI5.220e-6878.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNR8_9PHAE4.220e-4356.17Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 11..34
e-value: 0.88
score: 10.0
coord: 96..123
e-value: 7.4E-6
score: 25.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 149..197
e-value: 4.1E-10
score: 39.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 96..124
e-value: 4.4E-6
score: 24.5
coord: 188..220
e-value: 1.5E-6
score: 26.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 185..219
score: 10.698
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 59..93
score: 6.511
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 94..128
score: 10.468
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 150..184
score: 10.501
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..39
score: 6.862
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..149
score: 5.042
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..128
e-value: 2.4E-17
score: 65.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 129..238
e-value: 8.2E-28
score: 99.0
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 73..193
coord: 136..234
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 4..125
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 73..193
coord: 136..234
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 4..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11401contigL-elsbetiae_contig11401:1949..6162 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11401.1228.1mRNA_L-elsbetiae_contig11401.1228.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11401 1949..6162 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11401.1228.1 ID=prot_L-elsbetiae_contig11401.1228.1|Name=mRNA_L-elsbetiae_contig11401.1228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
FAQVGLPYDIVTFVNMILGFAREDRYKDVLVMFEGLEAMMAANIRDGGPP
LQARNIIGHRNCYHEALKGCEVEGRWETARRILKSMHLQHMELDVVSYGA
AIGACGRRGRWKEALEILREMEASEGVSGGEWRKALHLLLKMINSGVEPD
TIAYNASISASANCGEWQMALKLFDSLFKAGLTPDSRTYSAVMIACFKGH
QWQKAMEVFVRMVSEGKLPNKQTINILMELLDEADQFSK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf