mRNA_L-elsbetiae_contig11401.1228.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11401.1228.1
Unique NamemRNA_L-elsbetiae_contig11401.1228.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11401.1228.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 5.220e-68
Identity = 188/238 (78.99%), Postives = 204/238 (85.71%), Query Frame = 1 
Query:    4 AQVGLPYDIVTFVNMILGFAREDRYKDVLVMFEGLEAMMAANIRDGGPPLQARNIIGHRNCYHEALKGCEVEGRWETARRILKSMHLQHMELDVVSYGAAIGXXXXXXXXXXXXXXXXEMEASEGVSGGEWRKALHLLLKMINSGVEPDTIAYNASISASANCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNILMELLDEADQFSK 717
            A+VGL YDI TFVNMILGFAREDRYKDVLVMF+GLE +++AN RDG   +Q R+  G+RNCYHE LKGCEVEG W+ ARRILKSMHLQ M++DVV+YGAAIG                EMEA + V+GGEWRKALHLLLKMINSG+EPDTIAYNASISASANCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NILMELLDEA +FSK
Sbjct:  543 AEVGLQYDIRTFVNMILGFAREDRYKDVLVMFQGLENLLSANARDG-ILVQPRSQTGYRNCYHETLKGCEVEGNWQMARRILKSMHLQSMDVDVVAYGAAIGACGRKGRWKEALEILREMEARDDVTGGEWRKALHLLLKMINSGIEPDTIAYNASISASANCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINILMELLDEAGKFSK 779
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BLAST of mRNA_L-elsbetiae_contig11401.1228.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.220e-43
Identity = 91/162 (56.17%), Postives = 105/162 (64.81%), Query Frame = 1 
Query:    4 AQVGLPYDIVTFVNMILGFAREDRYKDVLVMFEGLEAMMAANIRDGGPPLQARNIIGHRNCYHEALKGCEVEGRWETARRILKSMHLQHMELDVVSYGAAIGXXXXXXXXXXXXXXXXEMEASEGVSGG---------------EWRKALHLLLKMINSGVE 444
            A+VGL YDI TFVNMILGFAREDRYKDVLVMF+GLE++M+AN RDG   +Q  +  G+RNCYHE LKGCEVEG W+ ARRILKSMHLQ M++DVV+YGAAIG                EMEA + VS                         LLKMINSG+E
Sbjct:  723 AEVGLQYDIRTFVNMILGFAREDRYKDVLVMFQGLESLMSANSRDG-VVVQPSSQTGYRNCYHETLKGCEVEGNWQMARRILKSMHLQSMDVDVVAYGAAIGACGRKGRWKEALEILREMEARDDVSPNVXXXXXXXXXXXXXXXXXXXXXXLLKMINSGIE 883
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11401.1228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIK7_ECTSI5.220e-6878.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNR8_9PHAE4.220e-4356.17Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11401contigL-elsbetiae_contig11401:1949..6162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.5
Seed ortholog evalue4.1e-58
Seed eggNOG ortholog2880.D7FIK7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_000110.1
Exons6
Model size717
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11401.1228.1prot_L-elsbetiae_contig11401.1228.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11401 1949..6162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.34289-CDS-L-elsbetiae_contig11401:1948..20621622815348.34289-CDS-L-elsbetiae_contig11401:1948..2062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 1949..2062 -
1691682853.658582-CDS-L-elsbetiae_contig11401:1948..20621691682853.658582-CDS-L-elsbetiae_contig11401:1948..2062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 1949..2062 -
1622815348.3537507-CDS-L-elsbetiae_contig11401:2808..29291622815348.3537507-CDS-L-elsbetiae_contig11401:2808..2929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 2809..2929 -
1691682853.6706564-CDS-L-elsbetiae_contig11401:2808..29291691682853.6706564-CDS-L-elsbetiae_contig11401:2808..2929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 2809..2929 -
1622815348.3645253-CDS-L-elsbetiae_contig11401:3852..39501622815348.3645253-CDS-L-elsbetiae_contig11401:3852..3950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 3853..3950 -
1691682853.6812296-CDS-L-elsbetiae_contig11401:3852..39501691682853.6812296-CDS-L-elsbetiae_contig11401:3852..3950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 3853..3950 -
1622815348.3745997-CDS-L-elsbetiae_contig11401:4800..48551622815348.3745997-CDS-L-elsbetiae_contig11401:4800..4855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 4801..4855 -
1691682853.6922014-CDS-L-elsbetiae_contig11401:4800..48551691682853.6922014-CDS-L-elsbetiae_contig11401:4800..4855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 4801..4855 -
1622815348.4139314-CDS-L-elsbetiae_contig11401:5325..54411622815348.4139314-CDS-L-elsbetiae_contig11401:5325..5441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 5326..5441 -
1691682853.704395-CDS-L-elsbetiae_contig11401:5325..54411691682853.704395-CDS-L-elsbetiae_contig11401:5325..5441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 5326..5441 -
1622815348.4236906-CDS-L-elsbetiae_contig11401:5949..61621622815348.4236906-CDS-L-elsbetiae_contig11401:5949..6162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 5950..6162 -
1691682853.717033-CDS-L-elsbetiae_contig11401:5949..61621691682853.717033-CDS-L-elsbetiae_contig11401:5949..6162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11401 5950..6162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11401.1228.1

>prot_L-elsbetiae_contig11401.1228.1 ID=prot_L-elsbetiae_contig11401.1228.1|Name=mRNA_L-elsbetiae_contig11401.1228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
FAQVGLPYDIVTFVNMILGFAREDRYKDVLVMFEGLEAMMAANIRDGGPP
LQARNIIGHRNCYHEALKGCEVEGRWETARRILKSMHLQHMELDVVSYGA
AIGACGRRGRWKEALEILREMEASEGVSGGEWRKALHLLLKMINSGVEPD
TIAYNASISASANCGEWQMALKLFDSLFKAGLTPDSRTYSAVMIACFKGH
QWQKAMEVFVRMVSEGKLPNKQTINILMELLDEADQFSK
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mRNA from alignment at L-elsbetiae_contig11401:1949..6162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11401.1228.1 ID=mRNA_L-elsbetiae_contig11401.1228.1|Name=mRNA_L-elsbetiae_contig11401.1228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4214bp|location=Sequence derived from alignment at L-elsbetiae_contig11401:1949..6162- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCCCAGGTTGGTCTGCCGTACGACATCGTGACGTTCGTGAACATGAT
CCTCGGGTTTGCGAGAGAGGACAGGTACAAAGACGTGCTGGTGATGTTCG
AGGGCCTGGAGGCGATGATGGCGGCCAACATCAGGGACGGGGGCCCGCCG
CTGCAGGCCAGGAACATAATCGGTCACCGGAACTGCTACCACGAGGCGCT
CAAGGGTTGCGAGGTGCGTGGTGGTGGTGGTGGTGGTATTTTGTTTTCCC
TCCCATTATTGGCCTATTCGTCGTCTGCCCCACTGGCGCCCTTCCTCCAC
TACGACTAGTAATAGCTAGACGACCCAACCGGGGTCACACAGGGGGGGGG
GGTGGACCCCCTCCTGCGCTGTGGTGGTGTGGTGTGGTGCAGCGTGCGAT
GGACGATGTGTTGCCGTGTCGGTCTACGAAGTGCGTTTTGCACAGAAGTA
AGTGTGCTCTGGAGCGCGAAGGTGTGATGCCGTGTGAAATCCCTGCTTGC
TCAGTATGATAATCGGCTCGAACTTTCCTTTGTGTTTCGCGGTCGTTGTC
CACACTTTGGAAGCGGAAATAACTGACGGTAAAACACAAATTGCGGTGAA
ACGAAGCAGCCTTTCGCCAATTTCATCTTTTGCACCTAAGTACGTACTTC
TACATACATACTTCTCTGTGGATATCCAATGGTGGGCTGTGGTTCATGGA
AACTACTGCTGTGCGCCTCAGGTCGAGGGGAGGTGGGAGACGGCTCGACG
AATCCTCAAGTCGATGCACCTCCAACACATGGAGCTCGACGTGGTGTCGT
ACGGGGCGGCCATAGGCGCGTGCGGAAGAAGGGGCAGGTAAACATAGCTG
TATGCGCTGTGTAGACCTCCACCGCACCGCACTGCGGTCGGTATTGCTGG
CGATCGACGCGGCAAGATAATAATTAGAAGACAGCAGGGAAGGAACAGAA
CAGGGGGATTACCCTGTTTTTTGGGCTAGAGAGCTATGTAAGAAACGACA
GTCTCAACCAATGCCATGTGGGGCTGCTCCGTAGCAACCGCCAGCGTAGA
CCGGAGGTTTGCAGGATTTTTTTGTCGAAGAGCTTTTCGAAAGTCTCCCC
CGCGCATATGGTTTGGACTGATTCTCTCTTTTTTTTCTTTTTTTTTTCAA
CATTATCGGTTCGTTGCTCGTACATACATGGTGTGACGTCATTGCTGGTC
ACGATATTTTCATACAATACATGACTTTTTTTTTTTTTTTCACTTAATAT
TTAGTTGTCTCATAAAAAATTATTTGCTGTGCTTTTTTGTTCGTTTTTTT
GCCAAAGGTGGAAAGAAGCCCTGGAGATTCTGAGGGAGATGGAGGCCAGC
GAGGGCGTATCGGTGAGAACGCGCCCGACATTCCTGCCCCCGGAACCCTC
GTGTTCGATGTTGCGCGAGTAAATCGTTTCGTTCTTATGGTGAATAAATG
CGAACGCGCTTCTCGTTCGCTGTGGCTGACTAATTTATGACCATTCGAAA
GCTCTTGAGTGCAGCTTTCATTTGGTACGTATGCAGAAGGCCACGGTTCA
GTACTCTGGCAAGATGTCCTCATGACAAGGAGCCCATCGAGCACTGGAAA
TAGATGTGAAGAGGAAGAAGAAAAAAAAGGAGAAGTGGATCGTGGGCCAT
GAGGAGATATTAATCATTTTGCTCCTAAATACAACAGCAGTGTATTAAAA
AGAAAAAAAGAAAAAAAAAGTGTATTTTCTTGTTTTTGCTATTTTTTTTT
AATGTGAAGACAACATACACATACACAAACAGATGTAGCCTGGCGATTCG
AACGCTCGGGCTGGCTATGTAGAGAGAGGTACGAATGTGCATGGGTTTGG
CTTCACGTTGCGGCCGCACCGCGCTCCAAACGTACAACAGCAGTAGTTCC
GTACTGCTGTTGCAATCAGGGTACCAAAAACTCCGCCACCATCCGCCATC
GGGCGGCCGGCCTCTTATGTATATAAATACGACCATGATCATCCTTTACC
GCCACTACTGTCTTCTCACCCCGTCCATTTTTGTTCGTTCGTAGTGCACA
AATGCCGTCCCCACCAATCCCGTCCCGTGCCGTGACCGCATTGGCGTAAC
TGCTTGTGCTGCGCCGCCCGCCCGCTCGCCCGCTCGCCCGCCGCGTGTGG
CGTGCCGCCTGCTGCAGCCGAACGTGATTTGCTACAGCGCGGCGATCACG
GCCTGCGAGAAGGGCGGCGAATGGCGCAAGGCTCTGCACCTGCTCCTCAA
GATGATCAACTCGGGGGTGGAGCCCGACACCATCGCGTACAACGCGTCCA
TCAGCGCGAGGTGACCGCGCGCGGCATGCAACAACGAACAAACGGCCTTC
CTTCTGTTGCGCCCCGAGCCTGTTGCTGTTGTACCGTAGGTGACATAAGA
TAAGACACCCCCTGGACCGATTTTTATAGCTCAAGTACTCCACAGCAAGC
AGAGCGCCAGTCCAGAAAAGGGCGGCGTTGGAAAGATCTCGTCGAGAGCT
TCCCGACAACGTGGCGTTTGTGGTTAGAATCGTAACCGTTGCGGAGTAAC
CAAGCTTTCAATATCGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGG
TATGTCTGTTATGTACCATATGTATCTAGGCGACGCTCGCGATGCGTTGT
TCGTGACACCATCGTTTTGTTTTTCTTCCGCGGCGTCGACTGTGTGTGCC
CCCTTAAGTGTTTTGTGACCACGGGCGGGCCCCCCAAGGATGGGCTAATG
TTTTGGACTAGAGAGCTAATGTGAGGAACAACAACAACCATCGCGTGCGT
ACAGGCGCGTCCATCAGCTCGAGCTTATTTAGCGCGGCATGCAAAAAAAA
AAGAAAAAAAAAGAAGATGCAACCCAGTGACATCCTTTTGTGGCGTCCGG
GCCTGTTGCTGTTGTTGTGGCGGTACACTACGTAGGCGGCGCTCGCAATG
CGTCCGTGTTGCTTTTGCTCCTCCTCTGCATGGACACCTAAACCCCGGTC
GGCTACTGCACAGCTACTTCACTACATACAAGTTAGATCGTCAATAGGGC
CGATCGATGGCTCTTGTTCTGTGTTTTCTTCTTCTCCTCCGCGGCGGGAC
CCCCAAAACTTATTTGATCTACTAATTATCTATCCATGTATTTATGCGCA
GGCAGTGCATGCTTTCTTTCTAACCGTTCTTTTTCACGTGCGCCGTCCGA
TTTTTTTTTTTTTTAACGATATTTCTGTACCAGCGCCAACTGCGGCGAGT
GGCAGATGGCTCTCAAGCTTTTCGACAGCCTCTTCAAGGCTGGCCTTACG
CCGGACTCTCGCACGTACAGCGCGGTCATGATCGCCTGCTTCAAGGGGCA
CCAGGTTAGTAAATACGGGAAAACCCGTGGAAACCCGTGGAAGTGCTTCA
AGGGGGCATCAGGTTGGTCGGGCCTTCGCCGCGAAAAAAATAACTTTTAA
TTTATCTAGGGAAATAGAGACAGGGACCCCGTAACGCTAACCCTAAATTA
ACTTGTATCCAGGAAATAGAGACAGAGGCCCCGTAACACTTGACCCTGAA
CTAACCTGTATCTAGGAAATAGAGAGGGACCCCGTAAAAACCCTAACCCT
GAACTAACTTGTATCTAGGAAATAGAGAGGGACCCCGTAAAACCCTAACC
CTCAATTAACTTGTATCTAGGCAATAGAGACAGGGACCCCATAACCCGTA
ACCCTAATCCAAACCTAACCCCCGACCTCCTTTCTCAGTTATTCCTGTAT
TCTTATCGCATGGGTTGGCTGAAGACAAACTCTGCAAAGGCTACTGGGTT
AGTCACGACCTACTGCTACTGTGTTTGCTGTTGGTATTGCTGCTGCTGCA
TTCGCTGTCTTGGCAGTTTTGCCCTTGGGTGTTGTTGGTGGAGGCCACCG
GGGTTTCCATCCACCTTGCGGCATCGTACATTCGAGGAATCTCGTCGTCA
ATGGATTGCGTTATATTTGCTTGCATGTAACGATTAAGTACGATTGCCAA
CCGCCGGCTCTTCCTCATATAGCTATGTATAGGGGACCATATCCCCCCCC
AAGTACCTAACGCAACAACTGTTGTCAATCCTAATTAAATCTCTCAACAG
TGGCAGAAGGCGATGGAGGTGTTCGTGCGAATGGTTAGCGAGGGAAAGCT
CCCCAACAAGCAGACGATCAACATCCTCATGGAGCTTCTGGACGAGGCGG
ACCAATTCTCCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11401:1949..6162-

>mRNA_L-elsbetiae_contig11401.1228.1 ID=mRNA_L-elsbetiae_contig11401.1228.1|Name=mRNA_L-elsbetiae_contig11401.1228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig11401:1949..6162- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCCCAGGTTGGTCTGCCGTACGACATCGTGACGTTCGTGAACATGAT
CCTCGGGTTTGCGAGAGAGGACAGGTACAAAGACGTGCTGGTGATGTTCG
AGGGCCTGGAGGCGATGATGGCGGCCAACATCAGGGACGGGGGCCCGCCG
CTGCAGGCCAGGAACATAATCGGTCACCGGAACTGCTACCACGAGGCGCT
CAAGGGTTGCGAGTTTGCCCAGGTTGGTCTGCCGTACGACATCGTGACGT
TCGTGAACATGATCCTCGGGTTTGCGAGAGAGGACAGGTACAAAGACGTG
CTGGTGATGTTCGAGGGCCTGGAGGCGATGATGGCGGCCAACATCAGGGA
CGGGGGCCCGCCGCTGCAGGCCAGGAACATAATCGGTCACCGGAACTGCT
ACCACGAGGCGCTCAAGGGTTGCGAGGTCGAGGGGAGGTGGGAGACGGCT
CGACGAATCCTCAAGTCGATGCACCTCCAACACATGGAGCTCGACGTGGT
GTCGTACGGGGCGGCCATAGGCGCGTGCGGAAGAAGGGGCAGGTCGAGGG
GAGGTGGGAGACGGCTCGACGAATCCTCAAGTCGATGCACCTCCAACACA
TGGAGCTCGACGTGGTGTCGTACGGGGCGGCCATAGGCGCGTGCGGAAGA
AGGGGCAGGTGGAAAGAAGCCCTGGAGATTCTGAGGGAGATGGAGGCCAG
CGAGGGCGTATCGGTGGAAAGAAGCCCTGGAGATTCTGAGGGAGATGGAG
GCCAGCGAGGGCGTATCGGGCGGCGAATGGCGCAAGGCTCTGCACCTGCT
CCTCAAGATGATCAACTCGGGGGTGGAGCCCGACACCATCGCGTACAACG
CGTCCATCAGCGCGAGGGCGGCGAATGGCGCAAGGCTCTGCACCTGCTCC
TCAAGATGATCAACTCGGGGGTGGAGCCCGACACCATCGCGTACAACGCG
TCCATCAGCGCGAGCGCCAACTGCGGCGAGTGGCAGATGGCTCTCAAGCT
TTTCGACAGCCTCTTCAAGGCTGGCCTTACGCCGGACTCTCGCACGTACA
GCGCGGTCATGATCGCCTGCTTCAAGGGGCACCAGCGCCAACTGCGGCGA
GTGGCAGATGGCTCTCAAGCTTTTCGACAGCCTCTTCAAGGCTGGCCTTA
CGCCGGACTCTCGCACGTACAGCGCGGTCATGATCGCCTGCTTCAAGGGG
CACCAGTGGCAGAAGGCGATGGAGGTGTTCGTGCGAATGGTTAGCGAGGG
AAAGCTCCCCAACAAGCAGACGATCAACATCCTCATGGAGCTTCTGGACG
AGGCGGACCAATTCTCCAAGTGGCAGAAGGCGATGGAGGTGTTCGTGCGA
ATGGTTAGCGAGGGAAAGCTCCCCAACAAGCAGACGATCAACATCCTCAT
GGAGCTTCTGGACGAGGCGGACCAATTCTCCAAG
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