prot_L-elsbetiae_contig1109.976.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1109.976.1
Unique Nameprot_L-elsbetiae_contig1109.976.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length277
Homology
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BLAST of mRNA_L-elsbetiae_contig1109.976.1 vs. uniprot
Match: D7FMX3_ECTSI (Similar to NLR family, pyrin domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX3_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 1.190e-78
Identity = 149/287 (51.92%), Postives = 186/287 (64.81%), Query Frame = 0 
Query:    1 MAVLCKGLADARCRIRLLLLSNNVDLRDQGAAVLAETLRARSEVRTRAHRPSLQVDLGGCSIHTWGCLAVAACILDADDAES----GGPLVL-----NLGNNLIKDYGVEAMSCATLGQNYNDHKRRQG----QEHRRSKSPRVLNAFGTNLQNKSSRAVPYGATQINKAIAWAQQSGCQDKEYLCASIVGTKDLPPLTGTPLYAAATATGWPSIRHRSPRRSNPPGPSTWSVVLDGNKASERVVAGQGALAGLGEAALFRGCVLPETVAATKSWTRDAFWSKSEGK 274
            ++V+ KGL DARCR+R+L LS N+DLRD+G   LAE LR+RSE+   A + SLQVDL GCS++TWGC A+AA +LD ++  +    G   V+     NLG N IKD GVEAMSCA+LGQ Y DHK+RQ     Q+HR+SKSP VL+A                  +++KA     + G  + E  C     T DLPPLTGTPLY AATA  WP  RH  P+    P  +  SVVLDGN+ S+RV AGQG LAGLGEAALFRGCVLPET+ +   WTR +FW+K+ GK
Sbjct:  155 LSVISKGLVDARCRLRVLQLSGNIDLRDRGVNDLAEALRSRSEMYHGACQSSLQVDLHGCSVNTWGCRALAASVLDINNDGTHHGVGATAVVRLGTVNLGYNSIKDVGVEAMSCASLGQEYEDHKKRQSNARRQKHRQSKSPGVLDA-----------------ARVHKA----HEFGSGNLELRCEP---TGDLPPLTGTPLYVAATA-AWPDTRHDDPQAKGAPPSTPCSVVLDGNRVSDRVAAGQGGLAGLGEAALFRGCVLPETIVSNTGWTRGSFWTKTRGK 416
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BLAST of mRNA_L-elsbetiae_contig1109.976.1 vs. uniprot
Match: A0A6H5KL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL40_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 2.880e-55
Identity = 113/230 (49.13%), Postives = 144/230 (62.61%), Query Frame = 0 
Query:   54 QVDLGGCSIHTWGCLAVAACILDADDAES-----GGPLVLNLGNNLIKDYGVEAMSCATLGQNYNDHKRRQG----QEHRRSKSPRVLNAFGTNLQNKSSRAVPYGATQINKAIAWAQQSGCQDKEYLCASIVGTKDLPPLTGTPLYAAATATGWPSIRHRSPRRSNPPGPSTWSVVLDGNKASERVVAGQGALAGLGEAALFRGCVLPETVAATKSWTRDAFWSKSEGK 274
            +VDL GCS++TWGC A+AA +LD ++  +        + +NLG N IKD GVEAMSCA+LGQ+Y DHK+RQ     Q+H +SKSP VL+A                  ++++A  +   +    +E        T DLPPLTGTPLYAAATA  WP  RH  PR    P     SV+LDGN+ S+RV AGQG LAGLGEAALFRGCVLPET+ +   WTR +FW+K+ GK
Sbjct:  182 KVDLHGCSVNTWGCRALAASVLDINNEGTHYGVGATAVTVNLGYNSIKDVGVEAMSCASLGQDYEDHKKRQSNARRQKHHQSKSPGVLDA-----------------ARVHEAHEFGSGNLELRRE-------PTGDLPPLTGTPLYAAATA-AWPDKRHEDPRAKGAP---PCSVLLDGNRVSDRVAAGQGGLAGLGEAALFRGCVLPETIVSNTGWTRGSFWTKTPGK 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1109.976.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMX3_ECTSI1.190e-7851.92Similar to NLR family, pyrin domain containing 3 n... [more]
A0A6H5KL40_9PHAE2.880e-5549.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..148
e-value: 3.1E-7
score: 31.5
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 3..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1109contigL-elsbetiae_contig1109:13322..14924 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1109.976.1mRNA_L-elsbetiae_contig1109.976.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1109 12638..14926 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1109.976.1 ID=prot_L-elsbetiae_contig1109.976.1|Name=mRNA_L-elsbetiae_contig1109.976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MAVLCKGLADARCRIRLLLLSNNVDLRDQGAAVLAETLRARSEVRTRAHR
PSLQVDLGGCSIHTWGCLAVAACILDADDAESGGPLVLNLGNNLIKDYGV
EAMSCATLGQNYNDHKRRQGQEHRRSKSPRVLNAFGTNLQNKSSRAVPYG
ATQINKAIAWAQQSGCQDKEYLCASIVGTKDLPPLTGTPLYAAATATGWP
SIRHRSPRRSNPPGPSTWSVVLDGNKASERVVAGQGALAGLGEAALFRGC
VLPETVAATKSWTRDAFWSKSEGKVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf