prot_L-elsbetiae_contig10927.840.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10927.840.1
Unique Nameprot_L-elsbetiae_contig10927.840.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length79
Homology
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.330e-33
Identity = 71/89 (79.78%), Postives = 75/89 (84.27%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGG----------GAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 79
            LLDFNSLYPSLIQEYNLCFTTMNWAACDMS+ AQGG           A AGPKLP LPA+GM+IGVLP+VIRTLVERRSVVKKMLKKEK
Sbjct:  977 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSTPAQGGEDDMDEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKMLKKEK 1065          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 97.4 bits (241), Expect = 7.480e-22
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 79
            LLDFNSLYPSLIQEYNLCFTTM W+  +  +  +GG  P G +LP LP +G++ GVLP+VI+TLV+RR  VKK LK EK
Sbjct:  520 LLDFNSLYPSLIQEYNLCFTTMEWSKSNAPANVEGGEVPQGDQLPPLPDEGLKRGVLPRVIKTLVDRRRNVKKFLKTEK 598          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: Q9SPV2_SKECO (DNA polymerase alpha (Fragment) n=2 Tax=Skeletonema costatum TaxID=2843 RepID=Q9SPV2_SKECO)

HSP 1 Score: 88.6 bits (218), Expect = 3.490e-21
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0
Query:    2 LDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 79
            +DFN LYPSLIQEYNLCFTTM+W    M  VA+G  AP    LP LP + ++ GVLP+VI+TLV+RR  VKK++K EK
Sbjct:    2 MDFNWLYPSLIQEYNLCFTTMDWTKSVMPQVAEGA-APQADLLPPLPDESLDRGVLPRVIKTLVDRRRAVKKLVKTEK 78          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S2L169_9STRA (DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.790e-19
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 79
            LLDFNSLYPSLIQEYNLCFTTM+W+     + A+G  AP G +LP LP + ++ GVLP+VI+TLV+RR  VK+++K EK
Sbjct:  933 LLDFNSLYPSLIQEYNLCFTTMDWSKSVTPNNAEGV-APQGDQLPPLPDESLDRGVLPRVIKTLVDRRRAVKRLVKTEK 1010          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: K0T5T4_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5T4_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 2.960e-17
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 79
            LLDFNSLYPSLIQEYNLCFTTM+WA      +A   GA    +LP+LP + ++ GVLP+VI++LVERR  VKK +K EK
Sbjct:  387 LLDFNSLYPSLIQEYNLCFTTMDWAKD--KDIADEAGAQEN-QLPSLPDESLDRGVLPRVIKSLVERRRNVKKFMKSEK 462          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.080e-17
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGG---------------------GAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKE 78
            LLDFNSLYPS+IQEYNLCFTT+NW+A    S   GG                      A  G +LP LP   ++ G+LP+VI+TLV+RRS VKK+LK E
Sbjct:  966 LLDFNSLYPSIIQEYNLCFTTINWSAFARPSSTAGGDPLAKTAGDEDDVGLGADEDEAAAGGAQLPPLPDTALDQGILPRVIKTLVDRRSSVKKLLKAE 1064          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S3QD78_9STRA (DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD78_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-16
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNW------AACDMSSVAQGGGAPAGP---------KLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 79
            LLDFNSLYPS+IQEYN+CFTTMNW      A  D +S + G                KLP +P +  + GVLP+VI+TLVERR  VKKMLK+EK
Sbjct:  938 LLDFNSLYPSIIQEYNMCFTTMNWGDYVYKAGNDATSNSNGEDGDEDQVAEVVSMDDKLPPIPDESTKEGVLPRVIKTLVERRKAVKKMLKQEK 1031          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S2UH04_9STRA (DNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH04_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPK-LPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 79
            LLDFNSLYPS+IQEYNLCFTT+NW++  ++ V      P+G   +  LP + ++ GVLP+VI+TLVERR  VKK+LK+EK
Sbjct:  954 LLDFNSLYPSIIQEYNLCFTTLNWSSGGVAEVKSE--TPSGEDYMVPLPDESVKQGVLPRVIKTLVERRRNVKKLLKQEK 1031          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S4EF44_9STRA (DNA polymerase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF44_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMN-WAACDMSSVA-------QGGGAPA---GPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKE 78
            LLDFNSLYPSLIQEYNLCFTT+N WA+     +A       +G G  +   G  LPALP D  E GVL KVIR+LV+RR  VK M+KKE
Sbjct: 1007 LLDFNSLYPSLIQEYNLCFTTVNGWASFHQQQIAALKEESARGCGPNSNTTGAALPALPDDSQETGVLAKVIRSLVQRRRQVKGMMKKE 1095          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S1BTL0_9STRA (DNA polymerase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTL0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.700e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACD--MSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKK 77
            LLDFNSLYPS+IQEYN CFTT+ W+A    +++ A    AP+G  L  LP     +GVLP+VI+TLVERR  VK M+KK
Sbjct:  539 LLDFNSLYPSIIQEYNFCFTTVEWSAHQEKVAAEASENDAPSGDILAPLPDGDAGVGVLPRVIKTLVERRRNVKNMMKK 617          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI10_ECTSI1.330e-3379.78DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
B8LEG9_THAPS7.480e-2263.29DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
Q9SPV2_SKECO3.490e-2160.26DNA polymerase alpha (Fragment) n=2 Tax=Skeletonem... [more]
A0A7S2L169_9STRA2.790e-1960.76DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=2... [more]
K0T5T4_THAOC2.960e-1760.76DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A4D9CVK1_9STRA4.080e-1749.49DNA polymerase n=1 Tax=Nannochloropsis salina CCMP... [more]
A0A7S3QD78_9STRA1.420e-1653.19DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=1... [more]
A0A7S2UH04_9STRA1.940e-1657.50DNA polymerase n=1 Tax=Attheya septentrionalis Tax... [more]
A0A7S4EF44_9STRA1.940e-1658.43DNA polymerase n=1 Tax=Pseudo-nitzschia australis ... [more]
A0A7S1BTL0_9STRA6.700e-1656.96DNA polymerase (Fragment) n=1 Tax=Corethron hystri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 1..79
e-value: 4.9E-17
score: 61.8
NoneNo IPR availableGENE3D1.10.287.690coord: 54..79
e-value: 1.9E-6
score: 29.9
NoneNo IPR availablePANTHERPTHR45861FAMILY NOT NAMEDcoord: 1..79
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..78
IPR023211DNA polymerase, palm domain superfamilyGENE3D3.90.1600.10coord: 1..46
e-value: 1.1E-9
score: 40.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10927contigL-elsbetiae_contig10927:672..1577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10927.840.1mRNA_L-elsbetiae_contig10927.840.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10927 672..1577 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10927.840.1 ID=prot_L-elsbetiae_contig10927.840.1|Name=mRNA_L-elsbetiae_contig10927.840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPAD
GMEIGVLPKVIRTLVERRSVVKKMLKKEK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR023211DNA_pol_palm_dom_sf