prot_L-elsbetiae_contig1089.813.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1089.813.1
Unique Nameprot_L-elsbetiae_contig1089.813.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length542
Homology
BLAST of mRNA_L-elsbetiae_contig1089.813.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 2.250e-113
Identity = 279/590 (47.29%), Postives = 318/590 (53.90%), Query Frame = 0
Query:    8 AASTAAAVAATTWAENLGGGAGDR-GRPGRQTCWALWREDLAAFEVLQPRGDSLRSMGTTWRGRTMLHAEEGLWLVERGMLAVHPFSDSS------TSRAPAATPSPPLG----GRSKDDQQGNPCRSHPEIR------EQEEKEEMGRGQ------ADCSDGSSAQKIDPPAPGAAGEASLTKAGLSSKRRFAWKAPAGKSEEGSDSRESG-----GPGGGGRK------RGRQKRAGCDRGCSGPGGSERNGRGAAPVLPMSVEDLHGSVLPRAGVPWECYRAYAELKGRSYVVRRQPEDTIGHDDTIPRAAALSWF---GLKKTTNGSTCAGTDDSNTAPSXXXXXXXXXXXXXXGASPLPVTFHVYKNPPG-SSSFRKRDPGPPDTLLAVCRFGDPMPEHRSLVALAERHASMKTDAGASASAGTPAEPRREGRTGAAVG--RDLGPEKTPSDRGNNRGR--------ERAAGGXXXXXXXXXSSGEEAEPEERER----------GGTLGGRRCREGGDEAGKDGDRTRPLSSAVQR--TPPXXXXXXXGERAGAGAIKLAVVSSEAGVQLFDVGLHNASEAVEL 537
            A+++AA+ AAT WAE LGGG GD  GRPGRQTCWA+W E+LA FEVLQPRGDSLRSMGTTWR R MLHAEEGLWLVERGMLAVHPFS +       T  A  A PS  +G     R   D+ G    S PEI       E EEKE  G GQ       D S G +A+ I P A     E S   +G+            G+S+   D   SG     G GGG RK       GRQ RAGC R   G G  ER  R AA  L +SV  L+  VL RAGVPWECYR YAELK RSYVVRRQPEDT+GHDDT PRAA LSWF   G  KT+N       + +++                  +S LPVTFHVY NP G SSSFRKRDPGPPD L+ VCRFGDPMP+HRSLVAL E HA+M+     S       + RR GR  +  G   DLGP++   DRG+            ER   G         S  +E   + + R          GG   GR   EG       G RT   S  V++  TP                IKLAVVS EA VQLFDVGLH+A EA EL
Sbjct:    8 ASASAASSAATEWAEGLGGGQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISS-STPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRA-----ELSPIDSGV---------ILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEGRQ-RAGCKRSRPGQGRGERVVRPAA-ALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSP-----------------SSSLPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQ------QWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSLLDEDRQKRQARTLPDQKKGLDGGRTRGRLTTEG------SGGRTLAFSKGVEKLSTP---------------GIKLAVVSGEAQVQLFDVGLHDALEAAEL 536          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1089.813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI2.250e-11347.29tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 30..89
e-value: 3.2E-8
score: 33.6
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 39..387

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1089contigL-elsbetiae_contig1089:15140..18012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1089.813.1mRNA_L-elsbetiae_contig1089.813.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1089 15055..18518 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1089.813.1 ID=prot_L-elsbetiae_contig1089.813.1|Name=mRNA_L-elsbetiae_contig1089.813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=542bp
MTSPAVEAASTAAAVAATTWAENLGGGAGDRGRPGRQTCWALWREDLAAF
EVLQPRGDSLRSMGTTWRGRTMLHAEEGLWLVERGMLAVHPFSDSSTSRA
PAATPSPPLGGRSKDDQQGNPCRSHPEIREQEEKEEMGRGQADCSDGSSA
QKIDPPAPGAAGEASLTKAGLSSKRRFAWKAPAGKSEEGSDSRESGGPGG
GGRKRGRQKRAGCDRGCSGPGGSERNGRGAAPVLPMSVEDLHGSVLPRAG
VPWECYRAYAELKGRSYVVRRQPEDTIGHDDTIPRAAALSWFGLKKTTNG
STCAGTDDSNTAPSSPSSPSSSSPSPSSGASPLPVTFHVYKNPPGSSSFR
KRDPGPPDTLLAVCRFGDPMPEHRSLVALAERHASMKTDAGASASAGTPA
EPRREGRTGAAVGRDLGPEKTPSDRGNNRGRERAAGGRRGGGEEDGSSGE
EAEPEERERGGTLGGRRCREGGDEAGKDGDRTRPLSSAVQRTPPPLPPPP
PGERAGAGAIKLAVVSSEAGVQLFDVGLHNASEAVELQGAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024336tRNA_splic_suSen54_N
IPR024337tRNA_splic_suSen54