prot_L-elsbetiae_contig10834.774.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10834.774.1
Unique Nameprot_L-elsbetiae_contig10834.774.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length58
Homology
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 6.490e-29
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0
Query:    5 SGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            SGSDDRTVKIWDYQTKTCVQTLEGH+NNVSAVLFHKRLPIIVSAGEDGTIRLW
Sbjct:   20 SGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRLW 72          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.490e-23
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SG+DDRTVKIWDYQTK C+QTLEGHS+NVS+V FH RLP+I+SA EDGT+RLW
Sbjct:  205 YLLSGADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRLW 260          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.240e-22
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SG+DD  ++IWDYQTK+CVQ LEGHSNNVSAV FH RLP+IVSA EDGT+RLW
Sbjct:  204 YLISGADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRLW 259          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.520e-22
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SG+DD  +KIWDYQTKTCVQTLEGH+ NVSAV+FH +LPII+S  EDGT+R+W
Sbjct:  120 YLVSGADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRVW 175          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 92.0 bits (227), Expect = 8.870e-21
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SG+DDR VKIWDYQ KTCVQTLEGH+ N++AV FH  LPII++  EDGT+R+W
Sbjct:   74 YLISGADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRIW 129          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S1F1A2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F1A2_NOCSC)

HSP 1 Score: 93.2 bits (230), Expect = 9.380e-21
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SGSDD+TV IWDYQTK CVQTL GH+NNVS  LFH  LPII++ GEDGT+R+W
Sbjct:  110 YLISGSDDKTVCIWDYQTKQCVQTLTGHTNNVSVALFHPTLPIILTGGEDGTVRVW 165          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A662WEK3_9STRA (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEK3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.390e-21
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SGSDDRTVK+WDYQTK  V TLEGH NN++AVL+H RLP+I+SA EDG +R+W
Sbjct:    6 YLLSGSDDRTVKVWDYQTKAIVHTLEGHGNNLTAVLYHPRLPLIISACEDGAVRMW 61          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 92.4 bits (228), Expect = 1.750e-20
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SG+DDR VKIWDYQ KTCVQTLEGH+ N+++V FH  LPII+S  EDGT+R+W
Sbjct:  206 YLISGADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRIW 261          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A5B7DSI3_PORTR (Coatomer subunit beta n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DSI3_PORTR)

HSP 1 Score: 87.4 bits (215), Expect = 6.670e-20
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SG+DD  VKIWDYQ KTCVQTLEGHS NVS+V FH  LPII++  ED T+R+W
Sbjct:   93 YLISGADDSLVKIWDYQNKTCVQTLEGHSQNVSSVSFHPELPIILTGSEDCTVRVW 148          
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A067C2D6_SAPPC (Coatomer_WDAD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2D6_SAPPC)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    2 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 57
            +  SGSDD+TVK+WDYQTKT V TL+GH++N+S VL+H RLP+I+SA EDG +R+W
Sbjct:   36 YLISGSDDKTVKVWDYQTKTIVHTLDGHTHNLSDVLYHPRLPLIISACEDGAVRMW 91          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI6.490e-2998.11Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3HJI1_9STRA2.490e-2375.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1Y0J4_9STRA2.240e-2273.21Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S3PEI6_9STRA2.520e-2269.64Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A293LKK5_ORNER8.870e-2166.07Vesicle coat complex COPI, beta' subunit (Fragment... [more]
A0A7S1F1A2_NOCSC9.380e-2169.64Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A662WEK3_9STRA9.390e-2167.86Coatomer_WDAD domain-containing protein (Fragment)... [more]
UPI0008F9C4D71.750e-2066.07coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A5B7DSI3_PORTR6.670e-2066.07Coatomer subunit beta n=1 Tax=Portunus tritubercul... [more]
A0A067C2D6_SAPPC1.130e-1964.29Coatomer_WDAD domain-containing protein n=1 Tax=Sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 19..57
e-value: 3.6E-4
score: 29.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 21..57
e-value: 6.7E-8
score: 33.1
coord: 3..16
e-value: 0.002
score: 18.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 26..57
score: 15.588
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..25
score: 11.812
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..57
e-value: 4.1E-24
score: 86.9
NoneNo IPR availablePANTHERPTHR19876:SF2COATOMER SUBUNIT BETA'coord: 4..57
NoneNo IPR availablePANTHERPTHR19876COATOMERcoord: 4..57
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..57
score: 22.649
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10834contigL-elsbetiae_contig10834:5131..5304 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10834.774.1mRNA_L-elsbetiae_contig10834.774.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10834 5131..5304 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10834.774.1 ID=prot_L-elsbetiae_contig10834.774.1|Name=mRNA_L-elsbetiae_contig10834.774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
MFFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGE
DGTIRLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf