prot_L-elsbetiae_contig10562.548.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10562.548.1
Unique Nameprot_L-elsbetiae_contig10562.548.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length301
Homology
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BLAST of mRNA_L-elsbetiae_contig10562.548.1 vs. uniprot
Match: D8LUC6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC6_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 3.730e-76
Identity = 154/304 (50.66%), Postives = 191/304 (62.83%), Query Frame = 0 
Query:    1 RDNT-PLSPRKQIVLDVFNMFDTDGSGEIELDEIAKAFKTTGKLTEETRAQLKAHFDFMDSDGSGKQNFLDHLSVTIDEFQSALGHGKIAFRNYQHQQAFHALGLTLCQNLVVYRRYMLHREFENMTQXXXXXXXXXXXXXXXGGFQVVQDQFDCLVRALVMSTFALDLKESAQAQSVDGGCGXXXXXXXXXXXXXXXKDGGKGRCRPKRGRTDAPSAWGGPCDE--DESLLQRREARVLAQALKVGRSRRCLRPLPASRQRHLRAKILADVSAIRKYQANNDGEQSDLAAIPHRTFLTKLPQR 301
            R NT P SPRKQIV+DVFNMFDTDGSGEIEL+E+AKAFK TGKLT+ETRAQL+AHF+FM                    F+ ALGHG+IAFRNYQHQQAF++LG+TLCQNLVVYRR++L+REFE+M Q               GG   ++DQFDCLVR+L+MSTFAL        +  D G G               ++GG  +         A  +  G  D+     LL++REARVLA ALKVG++RR LRPLPASR +HLRA +  +V+ I   + N+ GEQ    A PHR  L K+PQ+
Sbjct:    9 RTNTSPPSPRKQIVIDVFNMFDTDGSGEIELEEMAKAFKATGKLTDETRAQLEAHFEFM--------XXXXXXXXXXXXFREALGHGEIAFRNYQHQQAFYSLGVTLCQNLVVYRRHVLNREFESMKQQPPGSAV--------GG---LEDQFDCLVRSLMMSTFAL--------KGGDSGGGNDKGKGGGGHKEQLSQEGGCSKY--------ASKSLNGSDDQARKHELLRKREARVLAHALKVGQTRRQLRPLPASRGQHLRAVVRKEVADIWTRRENH-GEQRGSQASPHRRALKKVPQK 276
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10562.548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC6_ECTSI3.730e-7650.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 50..86
e-value: 100.0
score: 1.5
coord: 12..40
e-value: 7.2E-4
score: 28.9
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 15..82
e-value: 2.8E-7
score: 30.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 46..78
score: 7.149
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 8..43
score: 13.37
NoneNo IPR availableGENE3D1.10.238.10coord: 3..83
e-value: 3.1E-12
score: 48.4
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 21..33
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 14..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10562contigL-elsbetiae_contig10562:582..3749 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10562.548.1mRNA_L-elsbetiae_contig10562.548.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10562 582..3749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10562.548.1 ID=prot_L-elsbetiae_contig10562.548.1|Name=mRNA_L-elsbetiae_contig10562.548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=301bp
RDNTPLSPRKQIVLDVFNMFDTDGSGEIELDEIAKAFKTTGKLTEETRAQ
LKAHFDFMDSDGSGKQNFLDHLSVTIDEFQSALGHGKIAFRNYQHQQAFH
ALGLTLCQNLVVYRRYMLHREFENMTQQQQQQQQQQPSSSAAGGFQVVQD
QFDCLVRALVMSTFALDLKESAQAQSVDGGCGKGDGGGRGKGREKENKDG
GKGRCRPKRGRTDAPSAWGGPCDEDESLLQRREARVLAQALKVGRSRRCL
RPLPASRQRHLRAKILADVSAIRKYQANNDGEQSDLAAIPHRTFLTKLPQ
R
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair