mRNA_L-elsbetiae_contig10562.548.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10562.548.1
Unique NamemRNA_L-elsbetiae_contig10562.548.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10562.548.1 vs. uniprot
Match: D8LUC6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC6_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 3.730e-76
Identity = 154/304 (50.66%), Postives = 191/304 (62.83%), Query Frame = 1 
Query:    1 RDNT-PLSPRKQIVLDVFNMFDTDGSGEIELDEIAKAFKTTGKLTEETRAQLKAHFDFMDSDGSGKQNFLDHLSVTIDEFQSALGHGKIAFRNYQHQQAFHALGLTLCQNLVVYRRYMLHREFENMTQXXXXXXXXXXXXXXXGGFQVVQDQFDCLVRALVMSTFALDLKESAQAQSVDGGCGXXXXXXXXXXXXXXXKDGGKGRCRPKRGRTDAPSAWGGPCDE--DESLLQRREARVLAQALKVGRSRRCLRPLPASRQRHLRAKILADVSAIRKYQANNDGEQSDLAAIPHRTFLTKLPQR 903
            R NT P SPRKQIV+DVFNMFDTDGSGEIEL+E+AKAFK TGKLT+ETRAQL+AHF+FM                    F+ ALGHG+IAFRNYQHQQAF++LG+TLCQNLVVYRR++L+REFE+M Q               GG   ++DQFDCLVR+L+MSTFAL        +  D G G               ++GG  +         A  +  G  D+     LL++REARVLA ALKVG++RR LRPLPASR +HLRA +  +V+ I   + N+ GEQ    A PHR  L K+PQ+
Sbjct:    9 RTNTSPPSPRKQIVIDVFNMFDTDGSGEIELEEMAKAFKATGKLTDETRAQLEAHFEFM--------XXXXXXXXXXXXFREALGHGEIAFRNYQHQQAFYSLGVTLCQNLVVYRRHVLNREFESMKQQPPGSAV--------GG---LEDQFDCLVRSLMMSTFAL--------KGGDSGGGNDKGKGGGGHKEQLSQEGGCSKY--------ASKSLNGSDDQARKHELLRKREARVLAHALKVGQTRRQLRPLPASRGQHLRAVVRKEVADIWTRRENH-GEQRGSQASPHRRALKKVPQK 276
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10562.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC6_ECTSI3.730e-7650.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10562contigL-elsbetiae_contig10562:582..3749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_004470.1
Exons5
Model size903
Cds size903
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10562.548.1prot_L-elsbetiae_contig10562.548.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10562 582..3749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815279.3456535-CDS-L-elsbetiae_contig10562:581..8001622815279.3456535-CDS-L-elsbetiae_contig10562:581..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 582..800 +
1691682813.4565363-CDS-L-elsbetiae_contig10562:581..8001691682813.4565363-CDS-L-elsbetiae_contig10562:581..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 582..800 +
1622815279.356051-CDS-L-elsbetiae_contig10562:1397..14691622815279.356051-CDS-L-elsbetiae_contig10562:1397..1469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 1398..1469 +
1691682813.4664943-CDS-L-elsbetiae_contig10562:1397..14691691682813.4664943-CDS-L-elsbetiae_contig10562:1397..1469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 1398..1469 +
1622815279.3649325-CDS-L-elsbetiae_contig10562:1948..23531622815279.3649325-CDS-L-elsbetiae_contig10562:1948..2353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 1949..2353 +
1691682813.4797354-CDS-L-elsbetiae_contig10562:1948..23531691682813.4797354-CDS-L-elsbetiae_contig10562:1948..2353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 1949..2353 +
1622815279.3735669-CDS-L-elsbetiae_contig10562:2680..28061622815279.3735669-CDS-L-elsbetiae_contig10562:2680..2806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 2681..2806 +
1691682813.4923234-CDS-L-elsbetiae_contig10562:2680..28061691682813.4923234-CDS-L-elsbetiae_contig10562:2680..2806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 2681..2806 +
1622815279.381747-CDS-L-elsbetiae_contig10562:3668..37491622815279.381747-CDS-L-elsbetiae_contig10562:3668..3749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 3669..3749 +
1691682813.5025966-CDS-L-elsbetiae_contig10562:3668..37491691682813.5025966-CDS-L-elsbetiae_contig10562:3668..3749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10562 3669..3749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10562.548.1

>prot_L-elsbetiae_contig10562.548.1 ID=prot_L-elsbetiae_contig10562.548.1|Name=mRNA_L-elsbetiae_contig10562.548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=301bp
RDNTPLSPRKQIVLDVFNMFDTDGSGEIELDEIAKAFKTTGKLTEETRAQ
LKAHFDFMDSDGSGKQNFLDHLSVTIDEFQSALGHGKIAFRNYQHQQAFH
ALGLTLCQNLVVYRRYMLHREFENMTQQQQQQQQQQPSSSAAGGFQVVQD
QFDCLVRALVMSTFALDLKESAQAQSVDGGCGKGDGGGRGKGREKENKDG
GKGRCRPKRGRTDAPSAWGGPCDEDESLLQRREARVLAQALKVGRSRRCL
RPLPASRQRHLRAKILADVSAIRKYQANNDGEQSDLAAIPHRTFLTKLPQ
R
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mRNA from alignment at L-elsbetiae_contig10562:582..3749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10562.548.1 ID=mRNA_L-elsbetiae_contig10562.548.1|Name=mRNA_L-elsbetiae_contig10562.548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3168bp|location=Sequence derived from alignment at L-elsbetiae_contig10562:582..3749+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGACAATACGCCCCTGAGTCCCAGGAAGCAGATTGTTTTGGACGTATT
CAACATGTTCGACACCGACGGTTCCGGCGAAATCGAGCTCGATGAGATCG
CCAAGGCTTTCAAGACGACAGGAAAACTCACGGAGGAGACGAGGGCGCAG
CTCAAGGCTCACTTTGACTTTATGGATAGCGATGGCTCAGGCAAGCAGAA
TTTTCTCGACCACCTGTCTGTCTGTGTAAATACGAACATAGACCCGCCAC
ATTACAGACCGTCAAGCCCATTTCGTTGATATTCGGTCAGCTTCACTTGA
ACCACCCCCACACGACGCCGAACAGCTCTGGGGGTTTGCGTTCGAGGTTG
CCGGGGCCGAATTTGTGAATTTCTCTCAAAAGTATGCTGCTCGATAGTCA
GAGGTTTGCATATTGTACGTAAATAGTCTAGATAGACGAGATATATAACC
TCTGAAAAACATAATATTCTCTGAAAGCCGAAGGCGAGGAATAATGTCCG
AACGGGGAATGAAAATGTTGTGCAAGTGTGCTGAATAAAGGAAAGTTTTA
CCATTGCCTGAGAATAAAAACATGCTTTGGACGTGCCTGAAATGACCGGA
ACATACCCGCCGGAATACTTCTTGGCCAACCTCGCAAATTTTTGCAGGGG
AGATGCTGAATTCTTCTGATATCTTAGGTTGCTTTTCTGCTCGCTTCGCC
AGATATTACGTCACTGTATGAAATACCGTTTGAACCCCATATCGAGTCCT
TGCTCTAGTATGGGGTAGGTTCCATCTTTCATTCATTGTTTATTTTAAAA
AAAAACGCCAGGCGAGGTGACCATCGATGAGTTCCAAAGTGCTTTGGGCC
ACGGGAAGATAGCCTTCCGAAACTACCAACACCAGCAGGTAACATCGATG
TACAGTAAGTAGTACCCGCAATAGCCAGGTAGAGGTACTCTGCACACCAA
AAGACTCCGTCCACTCTACTCGACGCCGCTTGTTTTTGGGGAGTAGACTG
CATATTTACTACACTAAATGCTGCTTGCGATGCAATCGATGCCACACAGC
TAGTAGAGTACATGGTACAGTATACCCAACGCCCTGTTTCGCAAGACGGC
CAAACGGCGCCCGGCGGTTTTCTCAAAATCTTATGTACCGCCGTTGTCCC
CGTAAAAAATGCGTTTGTCAGGGGCACCTCCCGTAGGAAAAACACGTGCA
CGGGGAATATCCTCTTTTCTCTCTCTCGCTGGTTTCGAGCACGCACCTTG
ATTGTCGACCGTTTCGCCCTTTCGTTTTTCTTTAGATTGTGCGGGCTTGC
TTGCCTTCATCATAACGTCTCGTCTGTCCACCCAAATCGTTTTGGCCGTC
GATACCGATCGAATCAGGCTTTTCACGCTCTAGGTCTGACCTTGTGCCAG
AACCTCGTGGTTTACCGGAGGTACATGCTCCACCGGGAGTTCGAGAACAT
GACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCATCGAGTAGCGCGG
CGGGGGGGTTTCAGGTTGTACAGGATCAGTTCGACTGCTTGGTGCGAGCT
CTGGTGATGAGCACTTTCGCGCTCGACCTGAAGGAGTCGGCGCAAGCACA
GTCCGTCGACGGTGGCTGTGGCAAGGGCGACGGTGGGGGGCGGGGAAAGG
GAAGGGAAAAGGAAAATAAAGACGGGGGGAAGGGACGGTGTCGGCCGAAG
AGGGGGAGAACAGACGCCCCCAGCGCCTGGGGCGGGCCTTGCGACGAAGA
CGAGTCACTACTGCAACGTCGGGTGGGTTGTTGGTCGTGGTGTTGTGTGT
GTGTCGGTCCGTCGGCCACCGGAGGAGGAGTGCGTGCAAAGCAGATGGAG
TTCCTCCTGTGTGTGGTTGCACCTACTTGTTGGTCGGCAGCGCTCGCATG
TAAAGAGGGAGGGTTTGACAAGCCTAACGCGTTCTTCCTAAATACTCATA
AGGTAGATACGGCGTGTGCAACAATGCTTGCCCGGGGGGGGGGGGGGTGC
CACCGGCAACAGAGATGCTTTGCGCTTGTATAATGTGCACTTGTTGTTCT
CCTGGGCTGCCTTCTCTGTTCGGTTTATTGTATGTTTCTTCATCGTCAGG
AGGCTCGCGTGCTGGCTCAGGCCCTGAAGGTCGGACGTTCTCGAAGGTGT
CTGCGACCTCTTCCCGCCAGCAGGCAGCGGCATTTGCGGGCAAAGATATT
AGCGGACGTCTCGGCTATCAGAAAGGTGAGCCACTGGATCGATTTTTCAC
CGCTCGTGTTTCAACTTGTACGCCGTGGACGGTGTTTTTCTTTTGGGTGA
GGGCAGTGGTGGCGCACAGCGACATCTTGAGCGATGCATCTCTCTATGTT
CGTTTTTCCTTCGGCTACTCTTTCCTACCACCTCAATTAGGTCATCGTGC
AGTGATATTGCCTCAATTTTTTCACCCCGAAGTATGCAAGACCAGAAGCA
GTTTGTTTGATGTCGGATGGATGCGATTGGTATAGGAACACAGACATATC
GAATATCGCTTATTTTCTTTTGTTAAAGTTTGGGCAAACGACAAAAACTA
CGCAATTTCGCATGAATTCCCTCCACCTATAGCGTCCTCTCTCTCGCCTC
GTCGTACCTGATTTTTTGCCAAGAACCACCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCAACAACACACACACCACAAACCCCCAAAAAAAAAAA
AAAAAAAAAAAAATAATCTAATCAACAACACNNNNNNNNNNAAAAAAACT
ACGCAATTTCGCTTGAATCCCCCCCCCCTACAGCCCCCCCTCCCTCCCCT
CGTCCCCCCTGTTTTTTTGCCAAAAACCCCCCCCCCCCCCCCCCCCCCGC
AAAAAAAACGTTAACAACGCCTCAACATGTTGAAACGTACAAACACATAA
GTAGCTAGTAGTTTTACCAGAACCCTCCCTGGAAAATACGGGGAGCATTA
GATAGCTATCTATGTAGTCGATTCTGCGTGGTGCATGCCACGAATAGACT
TTACCGCGTGTGTGTGCAGCAAGCACCACTCTGTGGCAGACTTTGCCTAA
CATTATCGCGCGGCACGCATCCTTTGATCTGAAACAGTACCAGGCAAACA
ACGACGGAGAACAGAGTGACCTGGCAGCAATACCGCATCGAACGTTTTTG
ACGAAGCTGCCGCAGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10562:582..3749+

>mRNA_L-elsbetiae_contig10562.548.1 ID=mRNA_L-elsbetiae_contig10562.548.1|Name=mRNA_L-elsbetiae_contig10562.548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1806bp|location=Sequence derived from alignment at L-elsbetiae_contig10562:582..3749+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGACAATACGCCCCTGAGTCCCAGGAAGCAGATTGTTTTGGACGTATT
CAACATGTTCGACACCGACGGTTCCGGCGAAATCGAGCTCGATGAGATCG
CCAAGGCTTTCAAGACGACAGGAAAACTCACGGAGGAGACGAGGGCGCAG
CTCAAGGCTCACTTTGACTTTATGGATAGCGATGGCTCAGGCAAGCAGAA
TTTTCTCGACCACCTGTCTAGGGACAATACGCCCCTGAGTCCCAGGAAGC
AGATTGTTTTGGACGTATTCAACATGTTCGACACCGACGGTTCCGGCGAA
ATCGAGCTCGATGAGATCGCCAAGGCTTTCAAGACGACAGGAAAACTCAC
GGAGGAGACGAGGGCGCAGCTCAAGGCTCACTTTGACTTTATGGATAGCG
ATGGCTCAGGCAAGCAGAATTTTCTCGACCACCTGTCTGTGACCATCGAT
GAGTTCCAAAGTGCTTTGGGCCACGGGAAGATAGCCTTCCGAAACTACCA
ACACCAGCAGGTGACCATCGATGAGTTCCAAAGTGCTTTGGGCCACGGGA
AGATAGCCTTCCGAAACTACCAACACCAGCAGGCTTTTCACGCTCTAGGT
CTGACCTTGTGCCAGAACCTCGTGGTTTACCGGAGGTACATGCTCCACCG
GGAGTTCGAGAACATGACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
CATCGAGTAGCGCGGCGGGGGGGTTTCAGGTTGTACAGGATCAGTTCGAC
TGCTTGGTGCGAGCTCTGGTGATGAGCACTTTCGCGCTCGACCTGAAGGA
GTCGGCGCAAGCACAGTCCGTCGACGGTGGCTGTGGCAAGGGCGACGGTG
GGGGGCGGGGAAAGGGAAGGGAAAAGGAAAATAAAGACGGGGGGAAGGGA
CGGTGTCGGCCGAAGAGGGGGAGAACAGACGCCCCCAGCGCCTGGGGCGG
GCCTTGCGACGAAGACGAGTCACTACTGCAACGTCGGGCTTTTCACGCTC
TAGGTCTGACCTTGTGCCAGAACCTCGTGGTTTACCGGAGGTACATGCTC
CACCGGGAGTTCGAGAACATGACGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCCATCGAGTAGCGCGGCGGGGGGGTTTCAGGTTGTACAGGATCAGT
TCGACTGCTTGGTGCGAGCTCTGGTGATGAGCACTTTCGCGCTCGACCTG
AAGGAGTCGGCGCAAGCACAGTCCGTCGACGGTGGCTGTGGCAAGGGCGA
CGGTGGGGGGCGGGGAAAGGGAAGGGAAAAGGAAAATAAAGACGGGGGGA
AGGGACGGTGTCGGCCGAAGAGGGGGAGAACAGACGCCCCCAGCGCCTGG
GGCGGGCCTTGCGACGAAGACGAGTCACTACTGCAACGTCGGGAGGCTCG
CGTGCTGGCTCAGGCCCTGAAGGTCGGACGTTCTCGAAGGTGTCTGCGAC
CTCTTCCCGCCAGCAGGCAGCGGCATTTGCGGGCAAAGATATTAGCGGAC
GTCTCGGCTATCAGAAAGGAGGCTCGCGTGCTGGCTCAGGCCCTGAAGGT
CGGACGTTCTCGAAGGTGTCTGCGACCTCTTCCCGCCAGCAGGCAGCGGC
ATTTGCGGGCAAAGATATTAGCGGACGTCTCGGCTATCAGAAAGTACCAG
GCAAACAACGACGGAGAACAGAGTGACCTGGCAGCAATACCGCATCGAAC
GTTTTTGACGAAGCTGCCGCAGAGATACCAGGCAAACAACGACGGAGAAC
AGAGTGACCTGGCAGCAATACCGCATCGAACGTTTTTGACGAAGCTGCCG
CAGAGA
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