prot_L-elsbetiae_contig1043.432.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1043.432.1
Unique Nameprot_L-elsbetiae_contig1043.432.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length215
Homology
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BLAST of mRNA_L-elsbetiae_contig1043.432.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.170e-30
Identity = 73/128 (57.03%), Postives = 89/128 (69.53%), Query Frame = 0 
Query:   84 AKRALYDAWSQREVEEGLSRSGMFLEQAAEGTATGRGWKNGLSPVEGVFVSTRPDSGTGGAGVGTAGVLVSPTHEQRNKKSSTFSKPTAPSAAGNGTGSSSGVRAGGDSGRLMPRFSPVSDTRGKKQL 211
            +KRAL DAWS+RE+E+G SRSGMFL+QAAEGTA+GRGW + L   EGVFVSTRP  G G  G+G  G+LVSPT +QR  ++S    PT  S  GNG+      R GGD G L+PRFSPV +   +K L
Sbjct:  690 SKRALQDAWSERELEDGESRSGMFLDQAAEGTASGRGWNSTLPLAEGVFVSTRP--GLGPVGIG-GGILVSPTRDQRGSETSMMKPPTGSSDDGNGS------RTGGDDGGLLPRFSPVGEQFARKPL 808
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1043.432.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5T8_ECTSI3.170e-3057.03Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 67..94
e-value: 87.0
score: 3.5
coord: 39..66
e-value: 2.5
score: 14.3
coord: 11..38
e-value: 0.0035
score: 26.6
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 2..100
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 2..100
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..94
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..112
e-value: 1.0E-22
score: 82.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 11..31
e-value: 3.4E-4
score: 20.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1043contigL-elsbetiae_contig1043:24462..26821 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1043.432.1mRNA_L-elsbetiae_contig1043.432.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1043 22974..29249 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1043.432.1 ID=prot_L-elsbetiae_contig1043.432.1|Name=mRNA_L-elsbetiae_contig1043.432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
MKAIADALASNDSMRTLHLQDNAIGDDGVIAMTEALMRNARLRTVCLDGN
KVSEEGAKVICIAIKMNPALKLLSLSRNALPDDAKRALYDAWSQREVEEG
LSRSGMFLEQAAEGTATGRGWKNGLSPVEGVFVSTRPDSGTGGAGVGTAG
VLVSPTHEQRNKKSSTFSKPTAPSAAGNGTGSSSGVRAGGDSGRLMPRFS
PVSDTRGKKQLRGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt