prot_L-elsbetiae_contig1041.415.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1041.415.1
Unique Nameprot_L-elsbetiae_contig1041.415.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length879
Homology
BLAST of mRNA_L-elsbetiae_contig1041.415.1 vs. uniprot
Match: A0A6H5K1B7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B7_9PHAE)

HSP 1 Score: 535 bits (1378), Expect = 5.170e-174
Identity = 405/830 (48.80%), Postives = 465/830 (56.02%), Query Frame = 0
Query:   50 MVHPDRGFADPKEGFRRGSRGDYRKSCDDCTASKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKRARTSADGAEAHPDHLSSYGSPKSSTSARQPXXXXXXXXXXS--SIGLESGXXXXXXXXXXXXXXXXXXXXXDLPPTDPPKFCGPLNSDGLSALAELISPTLSDTGGSGSSNIXXXXXXXXXXXXXXXXXSGCHGGVDTSSAYGGHHAPPPSGNRYGPLPSMGADGASPFLDGRGTSPPGXXXXXXXXXXXXXXXXXAALSSLSAAPDHGMRQASAHRARGGGLKASL----------------------------SAPSGSMVPCPPQDLPARAKSLGELPAVGGXXXXXXXG---------HMGFYPEGAAMAGPTGNDLMGLCGGGXXXXXXXXXXXXXXQRATVGLTGVSSRGPLPMTLDARSRAHLRTFMRTVGSLVHLPGNDAIRGAVFSD--GYDSEEMPDAAPVGSGAGARAGGVENGAGACGTKR-GQPAAGDGDGRNSGGVVDTLAEACRAEAWAAAAVGAQFSGAGEQEGNEYVSRSLRAISQCLDAPLPEVAAVMILLALFWTHSMDTRKVARYFGFAQQVGLELGDRMPEGLRHTMAFVSSLVTMTLNLDQGPSYALEVKPHAVWGVSLRNSSSRPGVEPFILGLTAATMACNEMLLDGAGRASQARVRAVARMPVDGGGLPLPPVPLPSQVLTDLLATAATALVKANEEDGIINPEHMLAILHGLKGYTHAARGELEEAEAAARLMLEIIDRHAAVLHLPLTFTLAEASRRLLKTAAERSARRPDPGLHSAALHGARATLVFARP 837
            M+HPDR   DP EG+RRGSRG  RKSCD CT+SKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKR RT  D  +     L+   SP+   +  Q           S   IG  +G                     D  P   PKF GP+ SD LS L ELI+PTLSDTGGSGSS                   S CHGG +  +AY  H A     NRY  +P + A+G SPFL G       XXXXXXXXXXXXXXXXX                                                           + PS     CP +DLPARAKS+G+ P   G   XXXX            GF+ EG+ M         G   G               QR       +  RG LPMTLD RS+ HL+TFMRTVGSL+ LPG DAIR AVF D  G D ++ PDA P+     A  G  E+     G KR G+P A + D    GG+VD  AEACRAEAWAAAAVGAQFSGA E+E  +Y SR++RA+++CLDAPLPEVA+VM+L  LFW HSM+TRKV+RYFGFAQQVGLELG  MPE LRHT+AFV+ LVTMTLNLDQ  S++L+VK  AVWGVSLR++S RPGV+PF+L LTA T+ACNEML DGAGR  Q  + A        GGL                 +   A  K NE   +  P H          YTHAARGE E+AEA+ RLML IIDRHAAVLHLPLTFTLAEASRRLL  AAERS+R    G+H  AL  A   L FARP
Sbjct:    1 MIHPDRVAPDPTEGWRRGSRGPLRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKRPRTGMDAQQQA--GLAIKDSPEHKPAMHQQHAGVPHPPSPSLPPIGTIAGLDSSSNNMTGGGG--------DGLPVSNPKFGGPMTSDSLSGLVELIAPTLSDTGGSGSS-------ASITASINASISSSCHGGGE--AAYSHHAAAVSGNNRYTAIPGLHAEGVSPFLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPS-----CPVRDLPARAKSMGDTPGGFGQAGXXXXXXXXXXXXXVQAGFFSEGS-MENTFMRQQDGGSEGRQHASSALGAPLPQQQR-------LPPRGSLPMTLDGRSKTHLKTFMRTVGSLILLPGADAIRSAVFGDASGGDPKQSPDA-PIA----ADPGSAED----VGVKREGRPVAAEED----GGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMRALARCLDAPLPEVASVMLLFCLFWMHSMETRKVSRYFGFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLQVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGA--------GGL-----------------SPRVAPSKNNEYPTL--PAHA--------AYTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPTPEGVHVEALGAAVTKLSFARP 750          
BLAST of mRNA_L-elsbetiae_contig1041.415.1 vs. uniprot
Match: D8LQH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH3_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 1.010e-138
Identity = 255/402 (63.43%), Postives = 296/402 (73.63%), Query Frame = 0
Query:  437 RGPLPMTLDARSRAHLRTFMRTVGSLVHLPGNDAIRGAVFSD--GYDSEEMPDAAPVGSGAGARAGGVENGAGACGTKRGQPAAGDGDGRNSGGVVDTLAEACRAEAWAAAAVGAQFSGAGEQEGNEYVSRSLRAISQCLDAPLPEVAAVMILLALFWTHSMDTRKVARYFGFAQQVGLELGDRMPEGLRHTMAFVSSLVTMTLNLDQGPSYALEVKPHAVWGVSLRNSSSRPGVEPFILGLTAATMACNEMLLDGAGRASQARVRAVARMPVDGGGLPLPPVPLPSQVLTDLLATAATALVKANEEDGIINPEHMLAILHGLKGYTHAARGELEEAEAAARLMLEIIDRHAAVLHLPLTFTLAEASRRLLKTAAERSARRPDPGLHSAALHGARATLVFAR 836
            R  LPMTLD RS+ HL+TFMRTVGSL+ LPG  AIR AVF D  G D E++PDA        A   GV+        + G+P A + D    GG+VD  AEACRAEAWAAAAVGAQFSGA E+E  +Y SR++ A+S+CLDAPLPEVA+VM+LL LFW HSM+TRKVARYFGFAQQVGLELG  MPE LRHT+AFV+ LVTMTLNLDQ  S++L+VK  AVWGVSLR++S RPGV+PF+L LTA T+ACNEML DGAGR  Q  + A        GGL   P   PS+VLTDLL  AA AL +A+  DG  NPEH+LA+LHGL+ +THAARGE E+AEA+ RLML IIDRHAAVLHLPLTFTLAEASRRLL  AAERS+R    G+H  AL  A   L FAR
Sbjct:   66 RRSLPMTLDGRSKTHLKTFMRTVGSLILLPGAGAIRSAVFGDAGGGDPEQLPDAPTAADPGSAEDVGVK--------REGRPVAAEED----GGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMGALSRCLDAPLPEVASVMLLLCLFWMHSMETRKVARYFGFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLQVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGA--------GGLS--PRVAPSKVLTDLLTKAAKAL-EADARDGNRNPEHVLALLHGLRAFTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPAPEGVHVEALGAAVTKLSFAR 444          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1041.415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1B7_9PHAE5.170e-17448.80Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
D8LQH3_ECTSI1.010e-13863.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 73..147
e-value: 4.9E-5
score: 25.6
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 68..109
NoneNo IPR availablePANTHERPTHR47540FAMILY NOT NAMEDcoord: 74..153
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..575
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 594..879
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 576..593
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 75..102
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 75..104
score: 9.303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1041contigL-elsbetiae_contig1041:256..9376 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1041.415.1mRNA_L-elsbetiae_contig1041.415.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1041 255..9376 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1041.415.1 ID=prot_L-elsbetiae_contig1041.415.1|Name=mRNA_L-elsbetiae_contig1041.415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=879bp
RAQKPDPTFVSRHTWNSNAPDVPTRQKRTAVAPAYMTEKPGTDDDKTVLM
VHPDRGFADPKEGFRRGSRGDYRKSCDDCTASKTKCQGSIPCDRCKKRRI
ECKFSKRRRCGPKARAEDEKRARTSADGAEAHPDHLSSYGSPKSSTSARQ
PPPPSPPLPSISSIGLESGGGGGGGGVGGGGGGGSGGGGGDLPPTDPPKF
CGPLNSDGLSALAELISPTLSDTGGSGSSNISASISASISASISASISSG
CHGGVDTSSAYGGHHAPPPSGNRYGPLPSMGADGASPFLDGRGTSPPGGG
GNRAAGLPPSSSAAVAALSSLSAAPDHGMRQASAHRARGGGLKASLSAPS
GSMVPCPPQDLPARAKSLGELPAVGGGGGGSGGGHMGFYPEGAAMAGPTG
NDLMGLCGGGGGGSGSGGGGGRGRQRATVGLTGVSSRGPLPMTLDARSRA
HLRTFMRTVGSLVHLPGNDAIRGAVFSDGYDSEEMPDAAPVGSGAGARAG
GVENGAGACGTKRGQPAAGDGDGRNSGGVVDTLAEACRAEAWAAAAVGAQ
FSGAGEQEGNEYVSRSLRAISQCLDAPLPEVAAVMILLALFWTHSMDTRK
VARYFGFAQQVGLELGDRMPEGLRHTMAFVSSLVTMTLNLDQGPSYALEV
KPHAVWGVSLRNSSSRPGVEPFILGLTAATMACNEMLLDGAGRASQARVR
AVARMPVDGGGLPLPPVPLPSQVLTDLLATAATALVKANEEDGIINPEHM
LAILHGLKGYTHAARGELEEAEAAARLMLEIIDRHAAVLHLPLTFTLAEA
SRRLLKTAAERSARRPDPGLHSAALHGARATLVFARPGGGGGGAVAAGRG
GGGWCAVGDGIMAAFDRVCGGDGEHASAE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd