prot_L-elsbetiae_contig10091.132.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10091.132.1
Unique Nameprot_L-elsbetiae_contig10091.132.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length39
Homology
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-14
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR 39
            MSSSV+EPLDLIRLSL+ERIYVKCRGERELRGKLH   R
Sbjct:    1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDR 39          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.020e-14
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLH 35
            MSSSVEEPLDLIRLSLDERI+VKCRGERELRGKLH
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLH 35          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.000e-13
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 36
            ++ SVEEPLDLIRLSLDERIYVKCRG+RELRGKLH 
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHA 52          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.370e-13
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 36
            SVEEPLDLIRLSLDERIYVKCRG+RELRGKLH 
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHA 45          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 36
            MS+SVEEPLDLIRLSLDER+YVKCRG+RELRGKLH 
Sbjct:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHA 36          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A433PXC3_9FUNG (U6 snRNA-associated Sm-like protein LSm3-like protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PXC3_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 2.570e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    2 SSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR 39
            +S+VEEPLDL+RLSLDERIYVK RG+RELRGKLHV  R
Sbjct:   15 TSAVEEPLDLVRLSLDERIYVKLRGDRELRGKLHVGVR 52          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A7J7PUD3_9CHLO (Sm domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PUD3_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 9.540e-12
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 0
Query:    3 SSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 36
            ++V+EPLDLI+LSLDERIYVKCRGERELRG+LH 
Sbjct:    6 ATVKEPLDLIKLSLDERIYVKCRGERELRGRLHA 39          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: L8HA54_ACACA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HA54_ACACA)

HSP 1 Score: 62.8 bits (151), Expect = 9.890e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 36
            + S+VEEPLDLIRLSLD+RIYVK RGERELRGKLH 
Sbjct:   11 LGSTVEEPLDLIRLSLDDRIYVKLRGERELRGKLHA 46          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A453G015_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453G015_AEGTS)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR 39
            +V+EPLDLIRLSLDERIYVK R +RELRGKLHVS+R
Sbjct:    9 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVSAR 44          
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A383W7B2_TETOB (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W7B2_TETOB)

HSP 1 Score: 62.0 bits (149), Expect = 1.640e-11
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 0
Query:    3 SSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 36
            ++V+EPLDLI+LSLDERIYVKCRGERELRG+LH 
Sbjct:    6 ATVKEPLDLIKLSLDERIYVKCRGERELRGRLHA 39          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9CUN8_9STRA1.420e-1487.18U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
D7FXS6_ECTSI2.020e-1497.14U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2FJT0_9STRA7.000e-1386.11U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A7S2GP21_9STRA8.370e-1393.94U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A836CGM1_9STRA1.370e-1288.89WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A433PXC3_9FUNG2.570e-1281.58U6 snRNA-associated Sm-like protein LSm3-like prot... [more]
A0A7J7PUD3_9CHLO9.540e-1282.35Sm domain-containing protein n=1 Tax=Scenedesmus s... [more]
L8HA54_ACACA9.890e-1283.33U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=A... [more]
A0A453G015_AEGTS1.060e-1183.33Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A383W7B2_TETOB1.640e-1182.35U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..38
e-value: 7.3E-8
score: 34.1
NoneNo IPR availablePANTHERPTHR13110:SF9coord: 3..36
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 3..36
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10091contigL-elsbetiae_contig10091:5059..5175 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10091.132.1mRNA_L-elsbetiae_contig10091.132.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10091 5059..5175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10091.132.1 ID=prot_L-elsbetiae_contig10091.132.1|Name=mRNA_L-elsbetiae_contig10091.132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040002Sm-like_LSM3
IPR010920LSM_dom_sf