prot_L-elsbetiae_contig10066.111.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10066.111.1
Unique Nameprot_L-elsbetiae_contig10066.111.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length100
Homology
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A6H5L6K7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.270e-38
Identity = 75/93 (80.65%), Postives = 78/93 (83.87%), Query Frame = 0
Query:    8 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            RC  CG TN  D P SGDRAC  CG V QEN IVS+VQFSESGGSSNVVGQFVSGD+GRPSGGGA RGRGRFG SRDSR+ TIQNGKKKIIQV
Sbjct:   24 RCPSCGGTNFMDQPGSGDRACAECGTVVQENNIVSSVQFSESGGSSNVVGQFVSGDRGRPSGGGAARGRGRFGQSRDSRDATIQNGKKKIIQV 116          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A448Z1B8_9STRA (B-related factor 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1B8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.610e-17
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 0
Query:    9 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            C  CGS NIE    +G+  C  CGV+ +EN IVS ++F E +GGSS++VGQFVS    R +  G GRG G +G SRDSRETT+ NG+++I +V
Sbjct:    6 CPNCGSKNIESQGAAGNCVCTECGVIVEENAIVSHMEFVEGAGGSSSMVGQFVSATS-RKAYTGGGRGAGNYGFSRDSRETTLANGRRRIQEV 97          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A7S3L4B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4B3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.280e-16
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    9 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGA-----GRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            C  CGS ++E    SG   C  CGVV +EN IVS+V+F E +GGS+ +VG+FVSG   +   GG      G  R  +G SRDSRETT+ NG++KI ++
Sbjct:   34 CPDCGSRDVEQQDASGASVCTECGVVVEENAIVSSVEFVEGAGGSATMVGKFVSGSSSKAFTGGGPXXXXGFRRSNWGFSRDSRETTLANGRRKIQEI 131          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A1E7FX19_9STRA (B-related factor 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX19_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.120e-16
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 0
Query:    7 PRCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSES-GGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            P C  CGS +IE    SG   C  CGV+ +EN IVS V+F E  GG+S++VGQFVS    R +  G GR  G +G SRDSRETT+ NG++KI +V
Sbjct:    8 PVCPNCGSKHIELQGASGASVCTECGVILEENAIVSNVEFVEGQGGASSMVGQFVSATS-RKAYTGGGRAGGNYGFSRDSRETTLANGRRKIQEV 101          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: B7GD27_PHATC (B-related factor 1 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GD27_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 2.030e-15
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 0
Query:    9 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAG------RGRGRFGHSRDSRETTIQNGKKKIIQV 100
            C  CGST+IE    SG   C  CGVV +EN IVS V+F E +GG+S++VGQFVS    +   GG G          R+G SRDSRETT+ NG+++I +V
Sbjct:   69 CPNCGSTSIEQHDASGASVCTECGVVVEENAIVSAVEFVEGAGGASSMVGQFVSATSSKAYTGGPGGXXXXXXXXXRYGFSRDSRETTLANGRRRIQEV 167          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A2R7W7U2_ONCFA (TFIIB-type domain-containing protein n=2 Tax=Pentatomomorpha TaxID=33357 RepID=A0A2R7W7U2_ONCFA)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-14
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 0
Query:    8 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            +CK CGS+++E DP+ GD  C NCG V ++N IVS VQF E S G  + +GQFV+ D    SGG  G G       R+SRE T+QN ++ I  +
Sbjct:    5 KCKSCGSSDVEVDPSRGDTVCTNCGTVLEDNAIVSEVQFEENSHGVCSALGQFVASDS---SGGCQGFGNNFQSGGRESREVTLQNARRSISNL 95          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A7R9U6Q5_9STRA (B-related factor 1 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Q5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.340e-14
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 0
Query:    8 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            +C  C S  IE +   GD  C  CG V +EN IVS+++F E+GG   V GQF+S    +P      RGRGR+ +SRDSR+TT+ NG+++I QV
Sbjct:   15 QCPECASLEIEVNDAGGDAVCVRCGTVVEENAIVSSIEFEETGG---VRGQFMSATAQKPYSSSV-RGRGRYSYSRDSRDTTLANGRRQIGQV 103          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A1Z5JG53_FISSO (B-related factor 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG53_FISSO)

HSP 1 Score: 75.5 bits (184), Expect = 8.530e-14
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 0
Query:    9 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRP-SGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            C  CG   IE    SG   C  CG+V +EN IVS V+F E +GGSSN+VGQFVS    +  +G   GR   R+  S+DSRETT+ NG+++I +V
Sbjct:   36 CPNCGGKAIEQHEASGASICIECGIVVEENAIVSAVEFVEGAGGSSNMVGQFVSASSSKAYTGAAVGR---RYAFSKDSRETTLANGRRRIQEV 126          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A7S4S7X9_9STRA (B-related factor 1 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7X9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.170e-13
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    9 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 100
            C  CGST+IE    SG   C  CGVV +EN IVS+V++ E S G S +VG+FV+ ++ +   GG+G   G +G  RDSRE T+ NG+++I  V
Sbjct:   32 CPSCGSTDIESHEASGASICTECGVVVEENAIVSSVEYVEGSNGQSGMVGKFVAQNRSKAYSGGSGM-PGAYGFGRDSREQTLANGRRRIQDV 123          
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: B4G2P5_DROPE (B-related factor 1 n=7 Tax=obscura group TaxID=32355 RepID=B4G2P5_DROPE)

HSP 1 Score: 74.3 bits (181), Expect = 2.180e-13
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0
Query:    8 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESGGSSNVVGQFVSGDKGRPSGGGAGRGRGRF--GHSRDSRETTIQNGKKKI 97
            +C+ CGS  IE+D T GDR C NCG V +++ IVS VQF E G  +  +GQFVS +    SGG    G G+F  G   +SRE TI+  KK I
Sbjct:    6 KCRNCGSNEIEEDNTRGDRVCTNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAES---SGGATNYGYGKFQVGSGTESREVTIKKAKKDI 94          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K7_9PHAE1.270e-3880.65TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A448Z1B8_9STRA2.610e-1751.61B-related factor 1 n=1 Tax=Pseudo-nitzschia multis... [more]
A0A7S3L4B3_9STRA1.280e-1646.94Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1E7FX19_9STRA2.120e-1651.58B-related factor 1 n=1 Tax=Fragilariopsis cylindru... [more]
B7GD27_PHATC2.030e-1548.48B-related factor 1 n=1 Tax=Phaeodactylum tricornut... [more]
A0A2R7W7U2_ONCFA1.990e-1445.74TFIIB-type domain-containing protein n=2 Tax=Penta... [more]
A0A7R9U6Q5_9STRA3.340e-1446.24B-related factor 1 (Fragment) n=1 Tax=Pinguiococcu... [more]
A0A1Z5JG53_FISSO8.530e-1447.87B-related factor 1 n=2 Tax=Fistulifera solaris Tax... [more]
A0A7S4S7X9_9STRA1.170e-1346.24B-related factor 1 n=2 Tax=Ditylum brightwellii Ta... [more]
B4G2P5_DROPE2.180e-1347.83B-related factor 1 n=7 Tax=obscura group TaxID=323... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.25.10coord: 5..44
e-value: 5.0E-8
score: 34.1
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 6..50
IPR013137Zinc finger, TFIIB-typePFAMPF08271TF_Zn_Ribboncoord: 8..48
e-value: 1.2E-9
score: 37.5
IPR013137Zinc finger, TFIIB-typePROSITEPS51134ZF_TFIIBcoord: 3..36
score: 8.409
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 8..99
IPR029529Transcription factor IIIB subunit Brf1PANTHERPTHR11618:SF4TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNITcoord: 8..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10066contigL-elsbetiae_contig10066:1396..1695 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10066.111.1mRNA_L-elsbetiae_contig10066.111.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10066 1396..1695 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10066.111.1 ID=prot_L-elsbetiae_contig10066.111.1|Name=mRNA_L-elsbetiae_contig10066.111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MARPRVPRCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESG
GSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013137Znf_TFIIB
IPR000812TFIIB
IPR029529Brf1