prot_L-elsbetiae_contig10.39.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10.39.1
Unique Nameprot_L-elsbetiae_contig10.39.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length44
Homology
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A0S0GJY0_COSCS (Cytochrome b559 subunit beta n=68 Tax=Stramenopiles TaxID=33634 RepID=A0A0S0GJY0_COSCS)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-23
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            MTRNTNQPVAYPIFTFRWLA+HGLAVPTIFF+GAITSMQFIQR
Sbjct:    1 MTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 43          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A3R5UAF7_9STRA (Cytochrome b559 subunit beta n=2 Tax=Eustigmatales TaxID=425074 RepID=A0A3R5UAF7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.760e-21
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            M R+TNQPV YPIFTFRWLA+HGLAVPTIFFLG ITSMQFIQR
Sbjct:    1 MIRSTNQPVVYPIFTFRWLAVHGLAVPTIFFLGGITSMQFIQR 43          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A3R5TZL4_9STRA (Cytochrome b559 subunit beta n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5TZL4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-20
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            M R TNQPV YPIFTFRWLA+HGLA+PT+FFLGAIT+MQFIQR
Sbjct:    1 MIRGTNQPVVYPIFTFRWLAVHGLAIPTVFFLGAITAMQFIQR 43          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A1C9CCM0_9RHOD (Cytochrome b559 subunit beta n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCM0_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 1.190e-20
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 0
Query:    1 MTRN-TNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            MTRN TNQP+ YPIFTFRWLA+HGL VPT+FFLGAITSMQFIQR
Sbjct:    1 MTRNNTNQPITYPIFTFRWLAIHGLGVPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: PSBF_PHATC (Cytochrome b559 subunit beta n=81 Tax=cellular organisms TaxID=131567 RepID=PSBF_PHATC)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-20
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            M +N NQPVAYPIFTFRWLA+HGLA+PT+FFLG IT+MQFIQR
Sbjct:    1 MAKNINQPVAYPIFTFRWLAIHGLAIPTVFFLGGITAMQFIQR 43          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: PSBF_GRATL (Cytochrome b559 subunit beta n=77 Tax=Rhodophyta TaxID=2763 RepID=PSBF_GRATL)

HSP 1 Score: 83.2 bits (204), Expect = 2.400e-20
Identity = 36/44 (81.82%), Postives = 43/44 (97.73%), Query Frame = 0
Query:    1 MTR-NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            MTR N+NQP++YPIFTFRWLA+HG+A+PT+FFLGAITSMQFIQR
Sbjct:    1 MTRGNSNQPISYPIFTFRWLAIHGIAIPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: PSBF_NEOYE (Cytochrome b559 subunit beta n=17 Tax=Eukaryota TaxID=2759 RepID=PSBF_NEOYE)

HSP 1 Score: 82.8 bits (203), Expect = 3.420e-20
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            N NQPV+YPIFTFRWLA+HGLA+PT+FFLGAITSMQFIQR
Sbjct:    5 NANQPVSYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: PSBF_EMIHU (Cytochrome b559 subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=PSBF_EMIHU)

HSP 1 Score: 82.4 bits (202), Expect = 4.660e-20
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            NTNQPVAYPIFTFRWL +H LAVPT+FFLGAITSMQFIQR
Sbjct:    3 NTNQPVAYPIFTFRWLTIHALAVPTVFFLGAITSMQFIQR 42          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: A0A0D3M5G8_9STRA (Cytochrome b559 subunit beta n=3 Tax=cellular organisms TaxID=131567 RepID=A0A0D3M5G8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.660e-20
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    3 RNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            +NTNQPV YPIFTFRWLA+HGLAVPT+FFLG+IT+MQFIQR
Sbjct:    2 QNTNQPVVYPIFTFRWLAVHGLAVPTVFFLGSITAMQFIQR 42          
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Match: C6KIP2_AURAN (Cytochrome b559 subunit beta n=3 Tax=Pelagomonadales TaxID=54409 RepID=C6KIP2_AURAN)

HSP 1 Score: 82.4 bits (202), Expect = 4.760e-20
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 43
            M +  NQPVAYPIFTFRWLA+HGLAVPT+FFLGAITSMQFIQR
Sbjct:    1 MIKVLNQPVAYPIFTFRWLAVHGLAVPTVFFLGAITSMQFIQR 43          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.39.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S0GJY0_COSCS1.030e-2395.35Cytochrome b559 subunit beta n=68 Tax=Stramenopile... [more]
A0A3R5UAF7_9STRA5.760e-2188.37Cytochrome b559 subunit beta n=2 Tax=Eustigmatales... [more]
A0A3R5TZL4_9STRA1.160e-2083.72Cytochrome b559 subunit beta n=1 Tax=Characiopsis ... [more]
A0A1C9CCM0_9RHOD1.190e-2086.36Cytochrome b559 subunit beta n=2 Tax=Rhodophyta Ta... [more]
PSBF_PHATC1.660e-2081.40Cytochrome b559 subunit beta n=81 Tax=cellular org... [more]
PSBF_GRATL2.400e-2081.82Cytochrome b559 subunit beta n=77 Tax=Rhodophyta T... [more]
PSBF_NEOYE3.420e-2087.50Cytochrome b559 subunit beta n=17 Tax=Eukaryota Ta... [more]
PSBF_EMIHU4.660e-2090.00Cytochrome b559 subunit beta n=11 Tax=Eukaryota Ta... [more]
A0A0D3M5G8_9STRA4.660e-2085.37Cytochrome b559 subunit beta n=3 Tax=cellular orga... [more]
C6KIP2_AURAN4.760e-2086.05Cytochrome b559 subunit beta n=3 Tax=Pelagomonadal... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 41..43
NoneNo IPR availablePANTHERPTHR33391:SF9coord: 2..43
NoneNo IPR availablePANTHERPTHR33391FAMILY NOT NAMEDcoord: 2..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..43
NoneNo IPR availableSUPERFAMILY161045Cytochrome b559 subunitscoord: 10..43
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR006241Photosystem II cytochrome b559, beta subunitTIGRFAMTIGR01333TIGR01333coord: 1..43
e-value: 3.2E-27
score: 91.8
IPR006241Photosystem II cytochrome b559, beta subunitPIRSFPIRSF000037Cytochrome_PsbFcoord: 1..43
e-value: 1.4E-27
score: 92.7
IPR006241Photosystem II cytochrome b559, beta subunitHAMAPMF_00643PSII_PsbFcoord: 5..43
score: 19.841
IPR013081Photosystem II cytochrome b559, N-terminalPFAMPF00283Cytochrom_B559coord: 6..33
e-value: 3.0E-17
score: 61.7
IPR006216Photosystem II cytochrome b559, conserved sitePROSITEPS00537CYTOCHROME_B559coord: 13..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:74518..74649 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.39.1mRNA_L-elsbetiae_contig10.39.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10 74355..74799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10.39.1 ID=prot_L-elsbetiae_contig10.39.1|Name=mRNA_L-elsbetiae_contig10.39.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006241PSII_cyt_b559_bsu
IPR013081PSII_cyt_b559_N
IPR006216PSII_cyt_b559_CS