prot_L-elsbetiae_contig10.17.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10.17.1
Unique Nameprot_L-elsbetiae_contig10.17.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length619
Homology
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A6B7EVT1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT1_9PHAE)

HSP 1 Score: 1164 bits (3010), Expect = 0.000e+0
Identity = 570/618 (92.23%), Postives = 597/618 (96.60%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 618
            MKNLKQKFDYVKINLASPERI+EWAEKVLPNGE VGEVTEPETINYRTHKPEKGGLFCEKIFGPVK+WEC+CGLHK+K+K+VFFCEVCGVE+TE+RVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASP+ ELE+VIYNG  P+QD+DV KYE+VFLSSFYD+EGEGFHYG KRQGAEI+Y RLK +DLK+EIE NRNIMF +T+K KVE AIKKIRIFENFLTT TRPEWMV YFLPVLPPGIRPIV+L+NGRFATSDLNELYRKIIIRN RLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIY NEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVC+SFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTT+NRK LRGSNNYFANFNEVISAY+QKQLQLHSAIWVRCPND+NLD+PLKFIKKI LSKTT LVIYNNLQRKE + GELLVQYLRTTPGRIIFNQCVNDILNKSEVK
Sbjct:    1 MKNLKQKFDYVKINLASPERIQEWAEKVLPNGERVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECSCGLHKFKKKDVFFCEVCGVEVTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPINELEAVIYNGKEPDQDEDVAKYEEVFLSSFYDTEGEGFHYGKKRQGAEILYHRLKNLDLKVEIEKNRNIMFFETAKKKVEAAIKKIRIFENFLTTNTRPEWMVLYFLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTRNRKNLRGSNNYFANFNEVISAYKQKQLQLHSAIWVRCPNDINLDNPLKFIKKINLSKTTQLVIYNNLQRKETIDGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 618          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: D1J788_ECTSI (DNA-directed RNA polymerase subunit beta' n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J788_ECTSI)

HSP 1 Score: 1138 bits (2944), Expect = 0.000e+0
Identity = 556/618 (89.97%), Postives = 587/618 (94.98%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 618
            MKNLKQKFDYVKINLASPERI+EWAEK LPNGEIVGEVT+PETINYRTHKPEKGGLFCEKIFGPVK+WECTCGLHKYKEKNVFFCEVCGVELTE+RVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASP+ +LE+VIYNG  P+QD+D+ KYEQVFLSSFYD+EGEGFHYG KRQGAEI+Y RLKKIDLK EIE NRN+MF    K KVEVAIKKIRIFENFLTT TRPEWMV +F+PVLPPGIRPIV+L+NGRFATSDLNELYRKIIIRN RLKRLLSVHAPSVV+ TEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP LKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVL+RGR+IQLHPLVC+SFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS SSGEPTIQPSQDMVLGFYYLTTQNR  L GSNNYF++FNEVISAY+QKQ+Q+HS+IWVRCPN++NLDSPLKFIKKI LS    L IYNNLQRKE M GELLVQ+LRTTPGRIIFNQCVNDILNKSEVK
Sbjct:    1 MKNLKQKFDYVKINLASPERIKEWAEKTLPNGEIVGEVTQPETINYRTHKPEKGGLFCEKIFGPVKNWECTCGLHKYKEKNVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPISKLEAVIYNGKKPDQDEDLAKYEQVFLSSFYDTEGEGFHYGKKRQGAEILYHRLKKIDLKTEIEINRNVMFFSEVKKKVEVAIKKIRIFENFLTTGTRPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVISAYQQKQVQIHSSIWVRCPNEINLDSPLKFIKKINLSNNNTLTIYNNLQRKETMGGELLVQFLRTTPGRIIFNQCVNDILNKSEVK 618          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A0R6MFT6_UNDPI (DNA-directed RNA polymerase subunit beta' n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MFT6_UNDPI)

HSP 1 Score: 1047 bits (2707), Expect = 0.000e+0
Identity = 510/614 (83.06%), Postives = 556/614 (90.55%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILNK 614
            MKN+KQ+F+YVKINLASPERI+EWAEK+LPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVK+ ECTCG +K+KE +   CE+CGVELTE+RVRRHRMGYI LLSPVVHIWYLKGSPS LS +L S + +LE V+YNG  P QD DV KY+  F    YD+EGEGF YG KRQGAEI+YDRLK+IDLK+EI +NRNIMF       VE AIK+IRIFENFLTT TRPEWMV +FLPVLPPGIRP+V+L+NGRFATSDLNELYRKIIIRN RLKRLLSVHAPSVVI TEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPFIIY+LLSQGLSHSIK+AKKIIYSN+ FIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT QNR GL+GSNNYF+NFNEVI+AYEQKQLQLHS+IWVRCP D+ LD+ LKF+K I L     L IYNNLQRKE   G+LLVQY+RTTPGRIIFNQC+N+ILNK
Sbjct:    1 MKNMKQQFEYVKINLASPERIKEWAEKILPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNCECTCGRYKHKEPDTLICEICGVELTESRVRRHRMGYINLLSPVVHIWYLKGSPSFLSTILDSSITKLEGVVYNGKEPEQDQDVSKYDDFF----YDTEGEGFVYGKKRQGAEILYDRLKRIDLKVEIASNRNIMFCSNVTKAVEDAIKRIRIFENFLTTNTRPEWMVLHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFIIYKLLSQGLSHSIKKAKKIIYSNQSFIWYLTEEILRKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMGLKGSNNYFSNFNEVITAYEQKQLQLHSSIWVRCPKDITLDTELKFLKTIVLDNLQTLHIYNNLQRKETKDGQLLVQYIRTTPGRIIFNQCINNILNK 610          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A8F0F9J3_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J3_9PHAE)

HSP 1 Score: 1024 bits (2648), Expect = 0.000e+0
Identity = 500/614 (81.43%), Postives = 550/614 (89.58%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILNK 614
            MKN+KQ+F+YVKINLASP+ I+EWAEK LPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVK+WECTCG +K ++ ++  CE CGVELTE+RVRRHRMGYI LLSPVVHIWYLKGSPSLLSA+L S +  LESVIYNG  P QD D+ KY   F    YD+  EGF +  K QGAEI+YD LKKI+LK EIE NRNIM    +  K+E AIK++RIFENFLTT TRPEW + +FLPVLPPGIRP+V+L+NGRFATSDLNELYRKIIIRN RLKRLLSVHAP+VVI TEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF+IY+LLSQ LSHSIKRAKKIIYSN PFIW+LTEEIL+KHPIILNRAPTLHRLGVQAFDP+L+RGRAIQLHPLVCA+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT QNR  L+G+NNYF++FNEVISAYEQKQLQ+HS+IWVRCP D+ LD  LKF+K I LS   NL IYNNLQRKE  +GELLVQY+RTTPGRIIFN+CVNDILNK
Sbjct:    1 MKNMKQQFEYVKINLASPDCIKEWAEKTLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECTCGRYKQRDLSIVVCETCGVELTESRVRRHRMGYINLLSPVVHIWYLKGSPSLLSAILYSSITRLESVIYNGKEPGQDQDISKYTDFF----YDAMDEGFVFSKKSQGAEILYDSLKKINLKEEIEDNRNIMLCSKAVKKIEDAIKRVRIFENFLTTNTRPEWTILHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPNVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLIYKLLSQELSHSIKRAKKIIYSNRPFIWHLTEEILRKHPIILNRAPTLHRLGVQAFDPILVRGRAIQLHPLVCAAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMQLKGANNYFSDFNEVISAYEQKQLQVHSSIWVRCPTDITLDIQLKFLKTIVLSNNENLHIYNNLQRKETKTGELLVQYIRTTPGRIIFNECVNDILNK 610          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: D1GJH3_FUCVE (DNA-directed RNA polymerase subunit beta' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH3_FUCVE)

HSP 1 Score: 996 bits (2575), Expect = 0.000e+0
Identity = 476/615 (77.40%), Postives = 546/615 (88.78%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRC--PNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILN 613
            MKN+K++F+Y++INLASP+RI+EW+EK+LP GEI+GEVTEPETINYRTHKPEKGGLFCEKIFGPVK+WEC CG +K+K++ +  CE+CGVELTE+RVRRHRMGYIKLL+PVVHIWYLKGSPS LS +L S + ++E+++Y+G  P ++ ++ KYE  F    Y+++G GF YG K QG EI+YD+LK+IDLK+EIE NRNIMF       VE AIK+IRIFENFLTT TRPEWM+  FLPVLPPGIRP+VQL+NGRFATSDLNELYRKIIIRN RLKRLLSVHAPS+VI TEKRMIQE+VDTLIDNGKRGSK++D N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L LNQCGLPYEMAIELFLPFIIYRLLSQGL HSIK+AKKIIYSN+ FIWYLT+EIL KHPIILNRAPTLHRLGVQAFDP+L+ GRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT QNR GL+G+NNYF+NF+EV+SAY+QKQLQ+HS IWVRC   N + LD+ LKF K I L    N+ +YNNLQRKE   G+LLVQY+RTTPGRIIFNQC+NDILN
Sbjct:    1 MKNVKEQFEYLRINLASPKRIKEWSEKILPTGEIIGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKHKDEEIAICEICGVELTESRVRRHRMGYIKLLTPVVHIWYLKGSPSFLSIVLDSSISQIEAIVYSGKEPEKEHNILKYEDFF----YENQGPGFVYGKKPQGTEILYDKLKRIDLKVEIEINRNIMFCSNVTKVVEAAIKRIRIFENFLTTNTRPEWMILNFLPVLPPGIRPMVQLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIMTEKRMIQESVDTLIDNGKRGSKVVDTNRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPELHLNQCGLPYEMAIELFLPFIIYRLLSQGLCHSIKKAKKIIYSNQSFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPILVNGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRIGLKGTNNYFSNFHEVLSAYQQKQLQIHSTIWVRCFNSNQIFLDNELKFCKTIALGNDINIHVYNNLQRKETSQGKLLVQYIRTTPGRIIFNQCLNDILN 611          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A8F0JZT2_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT2_9PHAE)

HSP 1 Score: 985 bits (2546), Expect = 0.000e+0
Identity = 479/614 (78.01%), Postives = 541/614 (88.11%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILNK 614
            MK +KQ+F+YVKINLASPERI+EW EK LPNG+IVGEV EPETINYRTHKPEK GLFCEKIFGPVK+WECTCG +K+KE++   CEVCGVE+TE+RVRRHRMGYIKLL+PV+HIWYLKGSPS LSA+LAS V  +E ++Y      +D +   YE  F +       EGF YG K +G EI+YDRLKKI+LK EIE+NRNIMF   +   VE AIK+IRI+ENFLTT TRPEWM+  FLPVLPPG+RP+V+L++GRFATSDLNELYRKII+RN RL RLLSVHAP++VI+TEKRMIQEAVDTLIDNGKRGSK+LDAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF+I++LL QGL++SIKRAKKIIYSN  FIWYLTEE LKKHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQP+QDMVLGFYYLT  NR  L+G+NNYF+NFNEV+ AYEQKQLQLHS++WVR PN++ LD+PL ++K ITL    NL IYNNLQRKE M G+LLVQYLRTTPGRIIFNQCVNDILNK
Sbjct:    1 MKKVKQEFEYVKINLASPERIKEWGEKTLPNGKIVGEVIEPETINYRTHKPEKDGLFCEKIFGPVKNWECTCGRYKHKEEDTLICEVCGVEVTESRVRRHRMGYIKLLAPVLHIWYLKGSPSYLSAILASSVTNIEGLVYG-----RDPEFFDYEDFFFND------EGFVYGKKLEGTEILYDRLKKINLKTEIESNRNIMFCSNATKVVEDAIKRIRIYENFLTTNTRPEWMILNFLPVLPPGLRPMVKLDSGRFATSDLNELYRKIILRNKRLGRLLSVHAPNIVITTEKRMIQEAVDTLIDNGKRGSKVLDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLPFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMQLKGANNYFSNFNEVVIAYEQKQLQLHSSVWVRLPNNITLDTPLTYLKTITLKSNENLHIYNNLQRKETMDGKLLVQYLRTTPGRIIFNQCVNDILNK 603          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A141BSD2_9PHAE (DNA-directed RNA polymerase subunit beta' n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD2_9PHAE)

HSP 1 Score: 984 bits (2544), Expect = 0.000e+0
Identity = 471/613 (76.84%), Postives = 546/613 (89.07%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILN 613
            MK ++++F+Y++INLASP+RI+EW++K LP GE++GEVTEPETINYRTHKPEKGGLFCEKIFGPVK+WEC CG +K+++  +  CE CGVELTE+RVRRHRMGYIKLL+PVVHIWYLKG+PS L+++L SP+  +E++IY+G  P QD +V KYE  F     +++  GF +G K QGAEI+YD+LK IDLKIEIETNRNIMF  T    VE AIK+IRIFENFL+T TRPEWM+  FLPVLPPGIRP+V+LENGRFATSDLNELYRKIIIRN RLKRLLSVHAPS+VI TEKRMIQE+VDTLIDNGKRGSK++DAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L+LNQCGLPYEMAIELFLPFIIY+LLSQGL HSIK+AKKII+SN+PFIWYLT+EIL KHPIILNRAPTLHRLGVQAFDPVL++GRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSP++GEP IQPSQDM+LGFYYLTT NR GL+G+NNYF++F+EV+SAY+ KQL++HS IWVRC N++ LDS LKFIK I  +    L IYNNLQRKE   G+ LVQY+RTTPGRIIFNQC+NDILN
Sbjct:    1 MKTIEEQFEYIRINLASPQRIKEWSQKTLPTGEVIGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKHRDDEISICETCGVELTESRVRRHRMGYIKLLTPVVHIWYLKGAPSFLASILDSPISRIETIIYSGKEPEQDQEVLKYEDFFP----ENQLPGFVFGKKPQGAEILYDKLKNIDLKIEIETNRNIMFCSTVTKVVEAAIKRIRIFENFLSTNTRPEWMILQFLPVLPPGIRPMVKLENGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIITEKRMIQESVDTLIDNGKRGSKVVDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPKLQLNQCGLPYEMAIELFLPFIIYKLLSQGLCHSIKKAKKIIHSNQPFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPVLVKGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPATGEPNIQPSQDMILGFYYLTTHNRLGLKGANNYFSSFHEVLSAYQHKQLKVHSPIWVRCSNELLLDSKLKFIKTIN-NNNNKLHIYNNLQRKETSEGKFLVQYIRTTPGRIIFNQCLNDILN 608          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A8F0JYE1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYE1_9PHAE)

HSP 1 Score: 907 bits (2343), Expect = 0.000e+0
Identity = 448/611 (73.32%), Postives = 510/611 (83.47%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDI 611
            M   KQ F  VKINLASPERI+ W+EK LP+GEI+GEV E ETINYRTHKPEKGGLFCEKIFGPVK+WEC CG +K K KN   CEVC VE+ ++RVRRHRMGYI LL+PVVH+WYLKGSPS LSA+L SPVK +E V+Y   G     D  +YEQ   +       E F    + +GAEIIYD+L+KIDLK EIE NR IMF   +    E AIK+IR+FENFLTT T+PEWMV   LPVLPPGIRP++Q+ NGRFATSDLNELYRKIIIRNNRL RL+SVHAP+++I TEKRMIQE+VD LIDNGKRG K+LD++KRPLKSLADIIEGKQGRFR NLLGKR DYSGRSVIIVGPQL LNQCGLPYEMAIELFLPFII++LL QGL +SIK+AKKII+SN+ FIW+L +EIL +HPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLA NNFLSP++GE  I PSQDMVLGFYYLTTQNR  L+G+NNYF+NFNEVISAY+QKQL +HS+IWVRC ++++L + LKF K I L     L IYNNLQRKE  +G+ LVQYLRTTPGRI+FNQCVNDI
Sbjct:    1 MNKNKQDFVSVKINLASPERIKAWSEKELPSGEIIGEVLESETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKQKTKNDLICEVCSVEVIDSRVRRHRMGYISLLTPVVHVWYLKGSPSFLSAILESPVKTIEQVVY---GKTFGLDFSRYEQFLFTE------EDFATEKRLEGAEIIYDQLQKIDLKTEIEMNREIMFCSNNVKSTEDAIKRIRLFENFLTTNTKPEWMVLNCLPVLPPGIRPMIQMANGRFATSDLNELYRKIIIRNNRLGRLISVHAPNMIIKTEKRMIQESVDALIDNGKRGEKVLDSHKRPLKSLADIIEGKQGRFRLNLLGKRTDYSGRSVIIVGPQLALNQCGLPYEMAIELFLPFIIHKLLFQGLVYSIKKAKKIIFSNDSFIWFLLKEILIQHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLATNNFLSPATGEANIHPSQDMVLGFYYLTTQNRMKLKGANNYFSNFNEVISAYQQKQLHVHSSIWVRCSDNIDLYTQLKFFKTIELQNGNRLHIYNNLQRKETKNGDFLVQYLRTTPGRILFNQCVNDI 602          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A8E6D698_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D698_9PHAE)

HSP 1 Score: 849 bits (2194), Expect = 6.490e-305
Identity = 416/615 (67.64%), Postives = 504/615 (81.95%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQ---DDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDIL 612
            +K +K++F+YVKINLASPE+IR W EK LP GE+VGEVTE ETINYRT+KPEKGGLFCEKIFGP+K+WEC CG +     +   CE CGVE+TE++VRRHRMGYI+LL PV HIWYLKGSPS LS +L   VK LE +IY      +   D++ E+ E++     + S       G + +G   +Y+RLKKI+L+ EIE +R IM    S    E AIK+IRI ENFL+T T+PEWM+ YFLPV+PPG+RPI++LENGRFA+SDLNELYR+IIIRN RL RL+SVHAPSVV++TE RMIQE++DTLIDNGKRG+ ++D++KRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF++++L+ QGL++SI +AKKIIY+N+ FIW L +EIL +HP+ILNRAPTLHRLGVQAFD +L+ GRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQ+ETRLCLLAPNNFLSP++G+P IQP+QDMVLGFYYLT QN   L+GSN+YF +F EVI AY QKQL +HS+IWVRCP ++ LD  L   K +TL K + + IY +LQRKE   G LLVQYLRTTPGR+IFNQ VN++L
Sbjct:    3 IKKMKRQFEYVKINLASPEQIRGWGEKYLPTGEVVGEVTESETINYRTYKPEKGGLFCEKIFGPIKNWECGCGQYTQSFDDGIICENCGVEVTESKVRRHRMGYIRLLVPVAHIWYLKGSPSFLSIVLKQSVKTLEEMIYGKDLKEEGFLDEENEEDEEIINKKHFFS-------GNQLEGINSLYNRLKKINLRDEIEKSREIMLCAKSAKPFEDAIKRIRILENFLSTNTKPEWMLLYFLPVIPPGLRPIIKLENGRFASSDLNELYRRIIIRNKRLGRLMSVHAPSVVLNTETRMIQESIDTLIDNGKRGATVVDSHKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLMHKLIYQGLANSINKAKKIIYNNKSFIWGLLKEILGRHPVILNRAPTLHRLGVQAFDAILVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQIETRLCLLAPNNFLSPATGDPVIQPTQDMVLGFYYLTAQNHTNLKGSNHYFGSFEEVILAYSQKQLHIHSSIWVRCPVNIELDIKLDLPKIVTL-KDSRIKIYKDLQRKETHKGHLLVQYLRTTPGRVIFNQEVNNLL 609          
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Match: A0A2I4Q2A7_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A7_9PHAE)

HSP 1 Score: 848 bits (2190), Expect = 2.110e-304
Identity = 420/611 (68.74%), Postives = 492/611 (80.52%), Query Frame = 0
Query:    4 LKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKSWECTCGLHKYKEKNV-FFCEVCGVELTETRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDDVEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRNIMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIVQLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRCPNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPGRIIFNQCVNDILN 613
            ++Q++  ++INLAS ERI++W+E  LPNGEIVGE+TE +TINYRTHKPE+ GLFC+KIFGP+K WEC CGL+K +       CEVCGV +TE+RVRRHRMGYI LL PVVHIWYL+G P+ LS +L +P+K+LE  IY   G N   D+  YE+      +  EGE      + QGAEIIY +LK++DLK EI+ NR IM    S   VE AIK++RIFENFL T+T+PEWM+F  LPVLPPG+RPIVQL+NGR ATSDLNE YRKI+IR  RL RLLSV APS++I TEKRMIQE+VD LIDNGKRG K+LD +KRPLKSLA++IEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL LNQCGLPYEMA+ELFLPF+I+++    L+ SIK AKKIIYSN+ FIWYL +EIL KHPIILNRAPTLHRLGVQAFDPVL+ GRAIQLHPLVC +FNADFDGDQMAVHIPLS ESQLETRLCLLA NNFLSP++GEP I PSQDMVLGFYYLTTQNR  L+G+NNYF+ FNEVISAY+QK+L LHS+IWVRCP  V L+  L  +K   L     L IY N Q+KE   G+ L QYLRTTPGRIIFN+ +N+ILN
Sbjct:    1 MRQEYQCIQINLASSERIKKWSEITLPNGEIVGEITESDTINYRTHKPERNGLFCQKIFGPIKDWECICGLYKNEVTQAGLICEVCGVAITESRVRRHRMGYINLLHPVVHIWYLRGIPNFLSIILKAPLKKLEETIY---GKNLSRDLTNYEEF---EEFILEGELLSAQNQLQGAEIIYKKLKRLDLKEEIKNNRLIMVSSKSTKAVEDAIKRVRIFENFLATKTKPEWMIFNVLPVLPPGLRPIVQLDNGRLATSDLNEFYRKILIRTQRLGRLLSVQAPSMIIFTEKRMIQESVDALIDNGKRGPKVLDIHKRPLKSLAEMIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLHLNQCGLPYEMAVELFLPFLIHKIFFLKLAGSIKTAKKIIYSNKSFIWYLLKEILNKHPIILNRAPTLHRLGVQAFDPVLVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLESQLETRLCLLATNNFLSPATGEPNILPSQDMVLGFYYLTTQNRIKLKGNNNYFSTFNEVISAYQQKKLHLHSSIWVRCPKTVKLEMELVLLKIHILPNKDKLYIYQNFQKKETFDGKFLTQYLRTTPGRIIFNRRINEILN 605          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.17.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVT1_9PHAE0.000e+092.23DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1J788_ECTSI0.000e+089.97DNA-directed RNA polymerase subunit beta' n=8 Tax=... [more]
A0A0R6MFT6_UNDPI0.000e+083.06DNA-directed RNA polymerase subunit beta' n=25 Tax... [more]
A0A8F0F9J3_9PHAE0.000e+081.43DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1GJH3_FUCVE0.000e+077.40DNA-directed RNA polymerase subunit beta' n=3 Tax=... [more]
A0A8F0JZT2_9PHAE0.000e+078.01DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A141BSD2_9PHAE0.000e+076.84DNA-directed RNA polymerase subunit beta' n=14 Tax... [more]
A0A8F0JYE1_9PHAE0.000e+073.32DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A8E6D698_9PHAE6.490e-30567.64DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A2I4Q2A7_9PHAE2.110e-30468.74DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 232..511
e-value: 6.3E-151
score: 517.4
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100coord: 486..618
e-value: 9.6E-31
score: 109.4
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 341..396
e-value: 2.9E-9
score: 37.4
coord: 406..478
e-value: 3.5E-22
score: 79.4
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 486..605
e-value: 1.6E-12
score: 47.6
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 6..339
e-value: 2.5E-69
score: 234.0
NoneNo IPR availableGENE3D1.10.40.90coord: 370..413
e-value: 1.1E-10
score: 43.3
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 4..587
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 4..587
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..364
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 384..618
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 365..383
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 6..612
IPR034678DNA-directed RNA polymerase subunit RpoC1HAMAPMF_01323RNApol_bact_RpoC1coord: 1..614
score: 24.251

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:32840..34696 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.17.1mRNA_L-elsbetiae_contig10.17.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10 32840..34696 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10.17.1 ID=prot_L-elsbetiae_contig10.17.1|Name=mRNA_L-elsbetiae_contig10.17.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=619bp
MKNLKQKFDYVKINLASPERIREWAEKVLPNGEIVGEVTEPETINYRTHK
PEKGGLFCEKIFGPVKSWECTCGLHKYKEKNVFFCEVCGVELTETRVRRH
RMGYIKLLSPVVHIWYLKGSPSLLSAMLASPVKELESVIYNGIGPNQDDD
VEKYEQVFLSSFYDSEGEGFHYGTKRQGAEIIYDRLKKIDLKIEIETNRN
IMFLDTSKTKVEVAIKKIRIFENFLTTRTRPEWMVFYFLPVLPPGIRPIV
QLENGRFATSDLNELYRKIIIRNNRLKRLLSVHAPSVVISTEKRMIQEAV
DTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRS
VIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYS
NEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLV
CASFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPS
QDMVLGFYYLTTQNRKGLRGSNNYFANFNEVISAYEQKQLQLHSAIWVRC
PNDVNLDSPLKFIKKITLSKTTNLVIYNNLQRKEKMSGELLVQYLRTTPG
RIIFNQCVNDILNKSEVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR042102RNA_pol_Rpb1_3_sf
IPR000722RNA_pol_asu
IPR007066RNA_pol_Rpb1_3
IPR007080RNA_pol_Rpb1_1
IPR034678RNApol_RpoC1