mRNA_L-elsbetiae_contig9996.18916.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9996.18916.1
Unique NamemRNA_L-elsbetiae_contig9996.18916.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9996.18916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9996contigL-elsbetiae_contig9996:114..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817056.9470532-CDS-L-elsbetiae_contig9996:113..4311622817056.9470532-CDS-L-elsbetiae_contig9996:113..431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9996 114..431 +
1691684014.4166918-CDS-L-elsbetiae_contig9996:113..4311691684014.4166918-CDS-L-elsbetiae_contig9996:113..431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9996 114..431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817056.959005-UTR-L-elsbetiae_contig9996:431..4751622817056.959005-UTR-L-elsbetiae_contig9996:431..475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9996 432..475 +
1691684014.4289384-UTR-L-elsbetiae_contig9996:431..4751691684014.4289384-UTR-L-elsbetiae_contig9996:431..475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9996 432..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9996.18916.1prot_L-elsbetiae_contig9996.18916.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9996 114..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9996.18916.1

>prot_L-elsbetiae_contig9996.18916.1 ID=prot_L-elsbetiae_contig9996.18916.1|Name=mRNA_L-elsbetiae_contig9996.18916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
GEGLRVLAVDCGVAAVASVPPPPAGGITVGRISGVINAVPCGRNVGSTGG
CAGEGENQDGIADAEVAAPGLEGTTPESAGWNSVCSETTPGAAGGNPESA
ETTPG*
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mRNA from alignment at L-elsbetiae_contig9996:114..475+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9996.18916.1 ID=mRNA_L-elsbetiae_contig9996.18916.1|Name=mRNA_L-elsbetiae_contig9996.18916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=362bp|location=Sequence derived from alignment at L-elsbetiae_contig9996:114..475+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGGGTTGAGGGTGCTGGCCGTCGATTGTGGTGTCGCGGCGGTGGC
TTCAGTCCCCCCCCCGCCGGCCGGCGGCATCACAGTCGGGCGGATCTCCG
GCGTGATCAACGCGGTTCCCTGCGGAAGGAATGTGGGGTCTACTGGCGGT
TGCGCCGGGGAAGGAGAAAACCAAGACGGAATTGCTGACGCGGAAGTGGC
CGCACCAGGGCTCGAAGGTACCACGCCTGAGTCAGCGGGCTGGAATTCGG
TTTGCTCAGAAACTACGCCTGGAGCGGCGGGCGGGAACCCAGAATCGGCA
GAAACTACGCCTGGATAGACGGGCGGGAATCCAGCACGCGGAGGTACGGT
GCTAGGTGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9996:114..475+

>mRNA_L-elsbetiae_contig9996.18916.1 ID=mRNA_L-elsbetiae_contig9996.18916.1|Name=mRNA_L-elsbetiae_contig9996.18916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9996:114..475+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGGGTTGAGGGTGCTGGCCGTCGATTGTGGTGTCGCGGCGGTGGC
TTCAGTCCCCCCCCCGCCGGCCGGCGGCATCACAGTCGGGCGGATCTCCG
GCGTGATCAACGCGGTTCCCTGCGGAAGGAATGTGGGGTCTACTGGCGGT
TGCGCCGGGGAAGGAGAAAACCAAGACGGAATTGCTGACGCGGAAGTGGC
CGCACCAGGGCTCGAAGGTACCACGCCTGAGTCAGCGGGCTGGAATTCGG
TTTGCTCAGAAACTACGCCTGGAGCGGCGGGCGGGAACCCAGAATCGGCA
GAAACTACGCCTGGATAGGGAGAGGGGTTGAGGGTGCTGGCCGTCGATTG
TGGTGTCGCGGCGGTGGCTTCAGTCCCCCCCCCGCCGGCCGGCGGCATCA
CAGTCGGGCGGATCTCCGGCGTGATCAACGCGGTTCCCTGCGGAAGGAAT
GTGGGGTCTACTGGCGGTTGCGCCGGGGAAGGAGAAAACCAAGACGGAAT
TGCTGACGCGGAAGTGGCCGCACCAGGGCTCGAAGGTACCACGCCTGAGT
CAGCGGGCTGGAATTCGGTTTGCTCAGAAACTACGCCTGGAGCGGCGGGC
GGGAACCCAGAATCGGCAGAAACTACGCCTGGATAG
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