mRNA_L-elsbetiae_contig9993.18915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9993.18915.1
Unique NamemRNA_L-elsbetiae_contig9993.18915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: D8LN40_ECTSI (60S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN40_ECTSI)

HSP 1 Score: 457 bits (1176), Expect = 8.870e-162
Identity = 242/255 (94.90%), Postives = 249/255 (97.65%), Query Frame = 1
Query:    4 GVAKKQVKKQVKSTPKKVADPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            GVAKKQVKKQVKSTPKKVADPLFPA+KKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFS+A+DKNQATELLKVLMKYQPEDKKAKQQRL+EIAAAKEAGK+PAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDV PIELVVWLPALCRKM IPYCI+KGKARLGTLVHQKNAAVICLT VNKEDESKLS LKSNF AQFNEGF RKWGGG+MGLKTQRKLEKRQKAIEAELAKKAQY
Sbjct:    2 GVAKKQVKKQVKSTPKKVADPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: A0A6V1R9A7_HETAK (60S ribosomal protein L7a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9A7_HETAK)

HSP 1 Score: 321 bits (822), Expect = 6.680e-108
Identity = 174/242 (71.90%), Postives = 205/242 (84.71%), Query Frame = 1
Query:   55 VADPLFPAKKKSFRIGRDIQPKV-DLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEA-GKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKK--AQY 768
            V DPLF AK +SFR+G DI+PK  DLSR+VKWPR +R+QRQRKIL+QRLKVPP+I QFSQ L+KNQATEL K+L+KYQPE KKAKQQRL+E+AAA    G+ P P+     +K+GLKHVTTLIE+++A LV IAHDVNP+ELVVWLPALCRKM +P+C+VK KARLGTL H+KNAAV+ LT VNKED++KL TL +NF AQFN+   RKWGGGIMGLKTQRKLEKRQKA+EAELAKK  AQY
Sbjct:   19 VKDPLFQAKPRSFRVGGDIRPKKRDLSRYVKWPRNVRIQRQRKILLQRLKVPPAIQQFSQPLEKNQATELFKLLVKYQPETKKAKQQRLKEMAAAGATKGEKPGPT-----LKYGLKHVTTLIEQKEAKLVCIAHDVNPLELVVWLPALCRKMGVPFCVVKDKARLGTLCHKKNAAVVALTEVNKEDKAKLDTLGANFTAQFNDTPVRKWGGGIMGLKTQRKLEKRQKALEAELAKKTSAQY 255          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: F0Y2N8_AURAN (60S ribosomal protein L7a (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2N8_AURAN)

HSP 1 Score: 311 bits (797), Expect = 4.070e-104
Identity = 170/255 (66.67%), Postives = 200/255 (78.43%), Query Frame = 1
Query:   10 AKKQVKKQVKSTPKKVA---DPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEGFQ--RKWGGGIMGLKTQRKLEKRQKAIEAELAKK 759
            +KK+VK   K+ PKK A   DPLF A  ++FR+G DIQP  DLSRFVKWPRY+RLQRQ+KIL QRLKVPP++NQF+  LDKNQA EL K+LMKYQPEDK AK  R++ +A AK AG      KAP V+KFGLKHVT L+E +KA LV IA DV+PIELVVWLPALC+KMD+PYCIVK K+RLGT+VHQK AAV CLT V KED+  L  L+SNF A +N+     RKWGGGIMGLKTQ KL KR+KA++AELAKK
Sbjct:    3 SKKEVK---KAPPKKEAAKPDPLFQATPRNFRVGGDIQPTRDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: A0A3R7JAR0_9STRA (60S ribosomal protein L7a n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JAR0_9STRA)

HSP 1 Score: 311 bits (796), Expect = 8.400e-104
Identity = 170/245 (69.39%), Postives = 197/245 (80.41%), Query Frame = 1
Query:   40 STPKKVADPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            S PKK  DPLF +  K+FR G DIQPK DLSRFV+WPRY+RLQRQRKIL QRLKVPPS+NQFS  LDKN AT+L K+L+KYQPE K AK  RLR IAA KE    P     P V+KFGL HVT+L+E +KA LVVIAHDV+PIELVV+LPALCR+ DIPYCIVKGK+RLG LVHQKNAAV+ LT+VNKED++K  +L   F+A+FNE    +RKWGGGIMGLKTQ+KLE R+KA+ AE AKKAQY
Sbjct:   28 SKPKK--DPLFQSTPKNFRRGGDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSVNQFSNTLDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKFGLNHVTSLVENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKSRLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 265          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: T0QDT5_SAPDV (60S ribosomal protein L7a n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0QDT5_SAPDV)

HSP 1 Score: 311 bits (796), Expect = 8.690e-104
Identity = 169/242 (69.83%), Postives = 195/242 (80.58%), Query Frame = 1
Query:   49 KKVADPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            KK ADPLFP+  K+FR+G DIQPK DLSRFV+WP+ +RLQRQ KIL  RLKVPPSINQF+  LDKN AT+L K+L+KYQPE K AK QRLR+IAA KE    P     P VIK+GL HVT+LIE +KA +V IAHDV PIELVV+LPALCRKMDIPYCIVKGKARLG LVH+KNAAV+ LT VNKED++K  +L + F AQFN+    +RKWGGGIMGLKTQ+KLE R KA+ AELAKKAQY
Sbjct:   30 KKGADPLFPSAPKNFRLGGDIQPKRDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFTNTLDKNAATDLYKLLLKYQPESKAAKTQRLRDIAAGKEQVSAP-----PAVIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDESTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 266          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: A0A0P1B814_PLAHL (60S ribosomal protein L7a n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B814_PLAHL)

HSP 1 Score: 310 bits (795), Expect = 1.150e-103
Identity = 173/247 (70.04%), Postives = 197/247 (79.76%), Query Frame = 1
Query:   34 VKSTPKKVADPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNE--GFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            V ST KK  +PLF +  K+FR G DIQPK DLSRFV+WPRY+RLQRQRKIL QRLKVPPSINQFS  +DKN AT+L K+L+KYQPE K AK  RLR IAA K+    P     P V+KFGL HVT+LIE +KA LVVIAHDVNPIELVV+LPALCR+ DIPYCIVKGKARLG LVHQKNAAV+ LT+VNKED++K  +L   F A+FNE    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   25 VSSTSKK--NPLFASTPKNFRKGNDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAP-----PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: A0A7S3HBR5_9STRA (60S ribosomal protein L7a n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR5_9STRA)

HSP 1 Score: 305 bits (782), Expect = 8.870e-102
Identity = 159/237 (67.09%), Postives = 193/237 (81.43%), Query Frame = 1
Query:   58 ADPLFPAKKKSFRIGRDIQPK-VDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQ 765
            A+PLFP+  KSFRIG D++ K  DLSR+V+WPRY+R+QRQ+KIL+QRLKVPPSINQF + LDKNQA+EL K+L+KYQPE K AK  RL  +A A  A +       P  +KFGLKHVTTLIE++KA LVVI HDV+PIELV+WLPALCRKM++P+ IVKGK+RLGTL H+K  +V+CLT+VNKEDESKL TL  NF AQFN+  +RKWGGGIMGLKTQ KL+KR KA+E E AKKA+
Sbjct:   19 ANPLFPSTPKSFRIGGDLRLKGKDLSRYVRWPRYVRIQRQKKILLQRLKVPPSINQFQRTLDKNQASELFKLLVKYQPETKAAKTTRLEALAQATAAKESTPSGPPPATLKFGLKHVTTLIEQKKAKLVVIPHDVDPIELVLWLPALCRKMNVPFAIVKGKSRLGTLTHKKTCSVVCLTSVNKEDESKLKTLGENFKAQFNDNVERKWGGGIMGLKTQAKLDKRAKALEVEEAKKAE 255          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: K3WB90_GLOUD (60S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WB90_GLOUD)

HSP 1 Score: 305 bits (782), Expect = 1.290e-101
Identity = 169/243 (69.55%), Postives = 194/243 (79.84%), Query Frame = 1
Query:   46 PKKVADPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEGF--QRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            PKK  DPLF +  K+FR+G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQF+  +DKN A +L K+L+KYQPE K AK  RLR IAA KE    P     P VIK+GL HVT+LIE +KA LVVIAHDVNPIELVV+LPALCRK DIPY IVKGKARLG LVH+KNAAV+ LT+VNKED+SK  +L S F  +FN+    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   34 PKK--DPLFQSAPKNFRLGGDIQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFTNTIDKNTAADLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRKFDIPYTIVKGKARLGQLVHKKNAAVVALTHVNKEDKSKFDSLASAFKTKFNDDSTTRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 269          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: A0A6G0X5U8_9STRA (60S ribosomal protein L7a n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0X5U8_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.020e-100
Identity = 163/242 (67.36%), Postives = 194/242 (80.17%), Query Frame = 1
Query:   49 KKVADPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            KK ADPLFP+  ++FR+G +IQPK DLSRFV+WP+ +RLQRQ KIL  RLKVPPS+NQF+  LDKN A +LLK+L+KYQPE K AKQQRL++IAA KE    P     P VIK+GL HVT+LIE +KA LVVIAHDV P+ELVV+LPALCRKMDIPY I KGKARLG LVH+KNAAV+ LT VNKED++K  +L + F  QFN+    +RKWGGGIMGLKTQ+KLE R+KA+ AE AKKAQY
Sbjct:   32 KKAADPLFPSTPRNFRLGGNIQPKRDLSRFVRWPKNVRLQRQAKILQTRLKVPPSVNQFTNTLDKNHAVDLLKLLLKYQPETKAAKQQRLKDIAAGKEQAAAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVTPLELVVFLPALCRKMDIPYAIFKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLATAFRGQFNDETTHRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 268          
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Match: M4B6Z0_HYAAE (60S ribosomal protein L7a n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6Z0_HYAAE)

HSP 1 Score: 302 bits (774), Expect = 1.790e-100
Identity = 164/238 (68.91%), Postives = 192/238 (80.67%), Query Frame = 1
Query:   61 DPLFPAKKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKKAKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVNKEDESKLSTLKSNFNAQFNEGF--QRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 768
            +PLF ++ K+FR G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQFS ALDKN AT+L K+L+KYQPE K AK  RLR IAA KE    P     P V+KFGL HVTTLIE ++A LVVIAHDV+PIELVV+LPALCR+ DIPYCI+KGKARLG LVHQKNAA + LT+VNKED++K  +L     A++N+    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   32 NPLFVSRPKNFRRGGDIQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFSYALDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PSVVKFGLNHVTTLIETKRAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIIKGKARLGQLVHQKNAAAVALTHVNKEDKAKFDSLAGVVRAKYNDDSTSRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9993.18915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN40_ECTSI8.870e-16294.9060S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID... [more]
A0A6V1R9A7_HETAK6.680e-10871.9060S ribosomal protein L7a n=2 Tax=Heterosigma akas... [more]
F0Y2N8_AURAN4.070e-10466.6760S ribosomal protein L7a (Fragment) n=1 Tax=Aureo... [more]
A0A3R7JAR0_9STRA8.400e-10469.3960S ribosomal protein L7a n=8 Tax=Peronosporaceae ... [more]
T0QDT5_SAPDV8.690e-10469.8360S ribosomal protein L7a n=3 Tax=Saprolegniaceae ... [more]
A0A0P1B814_PLAHL1.150e-10370.0460S ribosomal protein L7a n=2 Tax=Peronosporaceae ... [more]
A0A7S3HBR5_9STRA8.870e-10267.0960S ribosomal protein L7a n=1 Tax=Spumella elongat... [more]
K3WB90_GLOUD1.290e-10169.5560S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID... [more]
A0A6G0X5U8_9STRA1.020e-10067.3660S ribosomal protein L7a n=8 Tax=Aphanomyces TaxI... [more]
M4B6Z0_HYAAE1.790e-10068.9160S ribosomal protein L7a n=1 Tax=Hyaloperonospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9993contigL-elsbetiae_contig9993:1753..4953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.8
Seed ortholog evalue2e-127
Seed eggNOG ortholog2880.D8LN40
Preferred nameDOCK4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K02936,ko:K08272,ko:K11649,ko:K17697
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03010,ko04015,ko04150,ko04152,ko04714,ko04723,ko04923,ko05225,map00561,map01100,map03010,map04015,map04150,map04152,map04714,map04723,map04923,map05225
KEGG ModuleM00098,M00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0000491,GO:0000492,GO:0002181,GO:0003008,GO:0003013,GO:0003018,GO:0003056,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005096,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006937,GO:0006940,GO:0008015,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0010467,GO:0012505,GO:0014910,GO:0014911,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0017016,GO:0017048,GO:0019229,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0030165,GO:0030234,GO:0030334,GO:0030335,GO:0030515,GO:0030695,GO:0030971,GO:0031090,GO:0031267,GO:0031974,GO:0031981,GO:0032420,GO:0032421,GO:0032501,GO:0032879,GO:0032991,GO:0034470,GO:0034512,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035150,GO:0035296,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042254,GO:0042273,GO:0042330,GO:0042788,GO:0042995,GO:0043005,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0043603,GO:0043604,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045906,GO:0045932,GO:0045986,GO:0046483,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050880,GO:0050896,GO:0051020,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051674,GO:0051716,GO:0055044,GO:0060326,GO:0060589,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090257,GO:0090304,GO:0097159,GO:0097458,GO:0097746,GO:0097755,GO:0098588,GO:0098772,GO:0098805,GO:0098858,GO:0098862,GO:0120025,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903522,GO:1903523,GO:1904694,GO:1904752,GO:1904754,GO:1990782,GO:1990904,GO:2000145,GO:2000147
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG1358@1,KOG3166@2759
EC3.1.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01002,ko03009,ko03011,ko03021,ko03036,ko04131
Ec32 ortholog descriptionRibosomal protein L7Ae/L8/Nhp2 family
Ec32 orthologEc-05_003390.1
Exons5
Model size771
Cds size771
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9993.18915.1prot_L-elsbetiae_contig9993.18915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9993 1753..4953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817056.8574536-CDS-L-elsbetiae_contig9993:1752..19861622817056.8574536-CDS-L-elsbetiae_contig9993:1752..1986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 1753..1986 -
1691684014.3493867-CDS-L-elsbetiae_contig9993:1752..19861691684014.3493867-CDS-L-elsbetiae_contig9993:1752..1986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 1753..1986 -
1622817056.8719265-CDS-L-elsbetiae_contig9993:2458..26171622817056.8719265-CDS-L-elsbetiae_contig9993:2458..2617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 2459..2617 -
1691684014.3689585-CDS-L-elsbetiae_contig9993:2458..26171691684014.3689585-CDS-L-elsbetiae_contig9993:2458..2617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 2459..2617 -
1622817056.8849664-CDS-L-elsbetiae_contig9993:3002..32001622817056.8849664-CDS-L-elsbetiae_contig9993:3002..3200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 3003..3200 -
1691684014.3849382-CDS-L-elsbetiae_contig9993:3002..32001691684014.3849382-CDS-L-elsbetiae_contig9993:3002..3200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 3003..3200 -
1622817056.8963096-CDS-L-elsbetiae_contig9993:3495..35611622817056.8963096-CDS-L-elsbetiae_contig9993:3495..3561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 3496..3561 -
1691684014.3955414-CDS-L-elsbetiae_contig9993:3495..35611691684014.3955414-CDS-L-elsbetiae_contig9993:3495..3561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 3496..3561 -
1622817056.9095855-CDS-L-elsbetiae_contig9993:4839..49531622817056.9095855-CDS-L-elsbetiae_contig9993:4839..4953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 4840..4953 -
1691684014.4075422-CDS-L-elsbetiae_contig9993:4839..49531691684014.4075422-CDS-L-elsbetiae_contig9993:4839..4953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9993 4840..4953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9993.18915.1

>prot_L-elsbetiae_contig9993.18915.1 ID=prot_L-elsbetiae_contig9993.18915.1|Name=mRNA_L-elsbetiae_contig9993.18915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
QGVAKKQVKKQVKSTPKKVADPLFPAKKKSFRIGRDIQPKVDLSRFVKWP
RYIRLQRQRKILVQRLKVPPSINQFSQALDKNQATELLKVLMKYQPEDKK
AKQQRLREIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIA
HDVNPIELVVWLPALCRKMDIPYCIVKGKARLGTLVHQKNAAVICLTNVN
KEDESKLSTLKSNFNAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAEL
AKKAQY*
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mRNA from alignment at L-elsbetiae_contig9993:1753..4953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9993.18915.1 ID=mRNA_L-elsbetiae_contig9993.18915.1|Name=mRNA_L-elsbetiae_contig9993.18915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3201bp|location=Sequence derived from alignment at L-elsbetiae_contig9993:1753..4953- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGTGTCGCAAAGAAGCAAGTTAAGAAGCAGGTCAAGTCCACCCCTAA GAAGGTGGCTGACCCCCTCTTCCCCGCCAAGAAGAAGAGCTTCCGCATCG GCCGCGACATCCAGGTAATACACGCCTACCAGGGCGTTTTCCGCCAAGGG GGAAGGGACAGAGCGGCCGAGTGAAAGAGGGTGGAGGCTGCTGCCGAAAA AACACTTCAGCTCCCCACTCTCTCTCGACTCTCCTCTCTGCCCCCCACCT CAGGCTCTTTAGCGGTTGGCCAATCGCGATGACATAAAGTCTACGGCCCC CGGCGGGAAGGAAATAAAAACTGGTTGTTTTTTTGCTCCGTTCTGGCTCT TCCTCTTCTCCCGCTGCCCTTCCCCCCCTGTCCCTCCTCTCTCCCGCTGT TCCGCTCACACCCCGATCCCTTTCCATGCTACCCTCCCTCGCTGCGAAAG CGAGGCTGTGGTGGAGAGAAGGGCTTGGGGGTTGAGCGGACTGCGTGGTG AGAGGGGGAGGGGTGGATGGGTTGGGCGGTGCGGGAAGGGGACGGACAGA CACTCCCGGGTTAACAACCACCTCGAAGTTTCCTTCTGCGGCAGGATCTG AGAAGTTCTCTAGTAGCGGCTGTTCCACCGCGCCGTGATGACCGAAAGTA GCGGTGGTGTACCTTAGCGCTGTTGCCCCGAGCGTAATGAAACAAATGCG GTGGTGAAATAGGCAAGTTTTACGTTGTGTACAAAATCACGAGAGGGCTT TGAAACTTGAACAATTTTGTCTGCAGTTTGCAGCGCTGCAGCTTTTTCCC TAGACGGCAATTTCGTTCCTTCGTGCGCGTTTGGGGTTGAAACCAAGCAT ATTTAGGTAGCTGTTGGTGAAGATTATCGCCAGCCAGCGAGCGCCAAAAG CCCCTCTGTACTGGCTTGGAGGCTTGGTCTTTTTTGAGAGAGGAGTAGAG ACCGTGCGCGCCTGCCTCGCCTGGGTCTCTTCATCTGTGAAACGGCGAAC TAATACTTCGTTAGGCCCACCTTTTTTGCATTTGGTGTTAATAAACGAAA AATACGTGCACACAGTCAAGGCTTGACTACCACGATATGGCTTTTCCGGG CAGCCATATGTACATAAAGTCGACAACGCAGTCCGCCCGTAGTAAATAGA CGGTAGTCTTGCGTGTCTCCGGCCTTCCTTCTCTGGCGTAGTTGGCCAGG TCTCCGTCCTCCTTCCCCGTCTCTTGTCCACTCCCCCCCCACGCTGTAGC TTCGCTGCCGTGCCCTCGGTGCGTCTCGCACATTTTGGTTGTCTCCTTTC TCACACTACCGTCGATCGATCGATCGCACTCCCCGCCCCCCATCAATGGG ACGCACATCGCTACTGCCGTCTACACTGCTTTGCCGCTACAGCCGAAGGT GGACCTGTCGAGGTTCGTCAAGTGGCCGAGGTACATCCGCCTCCAGCGCC AGCGCAAGGTGAGAGACAGACGGTCAGGCAGAGAGAATAAATAAAACAGA CAAGAGGCAAAGCTTTCTCTAAAAAGAAAAGCTGCGGTTGGCTGCCCTGC GATGAGCGCTACTCTCAGCTGATAACAGCAAACTTTTTTTTTTTTAAGCG TGTTGGGCGTAACAAGACTGTCCGCGTATATATATCTGCGTGCTCGTTTT CCCCATCCGTGTTCACCGTACATGTGTACATAATTGAAGTATATTTTTGG TAGTCTTCGCTCTGGACTCTGTTAAATTTGTGCTTGCTGTTTCGGTTCTC CAGATCCTGGTGCAGCGCCTCAAGGTGCCCCCGAGCATCAACCAGTTCAG CCAGGCGCTCGACAAGAACCAGGCCACCGAGCTCCTCAAGGTGCTGATGA AGTACCAGCCGGAGGACAAGAAGGCCAAGCAGCAGCGCCTGAGGGAGATC GCGGCTGCCAAGGAGGCCGGCAAGGACCCCGCGCCATCCAAGGCGCCCAA GGTATGTAGATGCATGTAAATGTGTATGCGGTGGTGATTCGGGTCCAGAT GGGCATTTTTTCGTTCCTTCTCGTCACACCGACAGAGGAAGTTGACATTT CCGGCATGTGCGGGCCGTGTCAACTCCGCGGGGGGCCTCAAAAGAACTCT GGCTGTCTGGGCCCTGTGACGCGAGCTCGAGGGCTTGGCACACACGGTGC CGCGCATTTTTTCGCAAAAGAGTGCGAGCGAAAATCCTTTAAAAGGAAAA CTGCGCTGTTCGTAACTTTTATAAATTTCCGCTTGTGTGTGTTTGCCAGA AGTTCGCAAAACTAAACGCCCGCTCGGTTTATTTAATGTTCACGTCATGT CTTGGTTTTCTATTTTGTCCCTGGCTTCTTCCTTAGGTCATCAAGTTTGG CCTCAAGCACGTGACCACGCTTATCGAGGAGCAGAAGGCGTCGCTTGTGG TGATCGCCCACGACGTGAACCCCATCGAGCTTGTGGTCTGGCTGCCCGCC CTCTGCCGCAAGATGGACATCCCTTACTGCATCGTCAAGGGCAAGGTACG CCGGGTTGCGTCGCGATGGGACGCGGGGGCATTTGAGCATTTGAGTCCTT CCCAAAATGTATTCTCAAGCGTCTTTCTCCTTTTTTTACTCGTCACACCG AACCGGCATTTACAGGTTGCATTTCGCCAAAGCTCTGGTCCGTGGCCGCA CATAGACGTTCCTCCGCTATTCCCCGTATGTAGCCGTCGATTTCAGCACG AAAGAGTCAGCCTCTTGACTCCATGTATATTCTGTTGTGTCTAATTAAAT TTTTGATATGGTCAGCTCCTCCGTACCGTTCTCCCTTCATGCTGCTAAAT ACATGAGCGCTTCATGTACATATCTGGTGTTGATTTCTCCTCTCTTCCTC CCCGCCCCTCCCCCTTCGCTTCGCTGTGTTTGTCGACCGACGCTGCTTGG CACTTTCCACTGGTCGGCGTTTGGACGATGGACGATCGCACAACCCCCCC CCCCCCCCCCTCCGCAGGCGCGCCTCGGCACCCTGGTCCACCAGAAGAAC GCGGCGGTGATCTGTCTCACCAACGTCAACAAGGAGGACGAGTCCAAGCT GTCGACGCTCAAGTCCAACTTCAACGCCCAGTTCAACGAGGGCTTCCAGA GGAAGTGGGGCGGCGGCATCATGGGCCTCAAGACCCAGCGCAAGCTGGAG AAGAGGCAGAAGGCCATCGAGGCCGAGCTGGCCAAGAAGGCCCAGTACTA G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9993:1753..4953-

>mRNA_L-elsbetiae_contig9993.18915.1 ID=mRNA_L-elsbetiae_contig9993.18915.1|Name=mRNA_L-elsbetiae_contig9993.18915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig9993:1753..4953- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGTGTCGCAAAGAAGCAAGTTAAGAAGCAGGTCAAGTCCACCCCTAA
GAAGGTGGCTGACCCCCTCTTCCCCGCCAAGAAGAAGAGCTTCCGCATCG
GCCGCGACATCCAGCAGGGTGTCGCAAAGAAGCAAGTTAAGAAGCAGGTC
AAGTCCACCCCTAAGAAGGTGGCTGACCCCCTCTTCCCCGCCAAGAAGAA
GAGCTTCCGCATCGGCCGCGACATCCAGCCGAAGGTGGACCTGTCGAGGT
TCGTCAAGTGGCCGAGGTACATCCGCCTCCAGCGCCAGCGCAAGCCGAAG
GTGGACCTGTCGAGGTTCGTCAAGTGGCCGAGGTACATCCGCCTCCAGCG
CCAGCGCAAGATCCTGGTGCAGCGCCTCAAGGTGCCCCCGAGCATCAACC
AGTTCAGCCAGGCGCTCGACAAGAACCAGGCCACCGAGCTCCTCAAGGTG
CTGATGAAGTACCAGCCGGAGGACAAGAAGGCCAAGCAGCAGCGCCTGAG
GGAGATCGCGGCTGCCAAGGAGGCCGGCAAGGACCCCGCGCCATCCAAGG
CGCCCAAGATCCTGGTGCAGCGCCTCAAGGTGCCCCCGAGCATCAACCAG
TTCAGCCAGGCGCTCGACAAGAACCAGGCCACCGAGCTCCTCAAGGTGCT
GATGAAGTACCAGCCGGAGGACAAGAAGGCCAAGCAGCAGCGCCTGAGGG
AGATCGCGGCTGCCAAGGAGGCCGGCAAGGACCCCGCGCCATCCAAGGCG
CCCAAGGTCATCAAGTTTGGCCTCAAGCACGTGACCACGCTTATCGAGGA
GCAGAAGGCGTCGCTTGTGGTGATCGCCCACGACGTGAACCCCATCGAGC
TTGTGGTCTGGCTGCCCGCCCTCTGCCGCAAGATGGACATCCCTTACTGC
ATCGTCAAGGGCAAGGTCATCAAGTTTGGCCTCAAGCACGTGACCACGCT
TATCGAGGAGCAGAAGGCGTCGCTTGTGGTGATCGCCCACGACGTGAACC
CCATCGAGCTTGTGGTCTGGCTGCCCGCCCTCTGCCGCAAGATGGACATC
CCTTACTGCATCGTCAAGGGCAAGGCGCGCCTCGGCACCCTGGTCCACCA
GAAGAACGCGGCGGTGATCTGTCTCACCAACGTCAACAAGGAGGACGAGT
CCAAGCTGTCGACGCTCAAGTCCAACTTCAACGCCCAGTTCAACGAGGGC
TTCCAGAGGAAGTGGGGCGGCGGCATCATGGGCCTCAAGACCCAGCGCAA
GCTGGAGAAGAGGCAGAAGGCCATCGAGGCCGAGCTGGCCAAGAAGGCCC
AGTACTAGGCGCGCCTCGGCACCCTGGTCCACCAGAAGAACGCGGCGGTG
ATCTGTCTCACCAACGTCAACAAGGAGGACGAGTCCAAGCTGTCGACGCT
CAAGTCCAACTTCAACGCCCAGTTCAACGAGGGCTTCCAGAGGAAGTGGG
GCGGCGGCATCATGGGCCTCAAGACCCAGCGCAAGCTGGAGAAGAGGCAG
AAGGCCATCGAGGCCGAGCTGGCCAAGAAGGCCCAGTACTAG
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