mRNA_L-elsbetiae_contig9976.18899.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9976.18899.1
Unique NamemRNA_L-elsbetiae_contig9976.18899.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9976.18899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9976contigL-elsbetiae_contig9976:2217..3187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.532361-CDS-L-elsbetiae_contig9976:2216..22691622817055.532361-CDS-L-elsbetiae_contig9976:2216..2269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9976 2217..2269 -
1691684013.5022037-CDS-L-elsbetiae_contig9976:2216..22691691684013.5022037-CDS-L-elsbetiae_contig9976:2216..2269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9976 2217..2269 -
1622817055.5439394-CDS-L-elsbetiae_contig9976:2955..31871622817055.5439394-CDS-L-elsbetiae_contig9976:2955..3187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9976 2956..3187 -
1691684013.5120537-CDS-L-elsbetiae_contig9976:2955..31871691684013.5120537-CDS-L-elsbetiae_contig9976:2955..3187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9976 2956..3187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9976.18899.1prot_L-elsbetiae_contig9976.18899.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9976 2217..3187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9976.18899.1

>prot_L-elsbetiae_contig9976.18899.1 ID=prot_L-elsbetiae_contig9976.18899.1|Name=mRNA_L-elsbetiae_contig9976.18899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
KADFGSWKACSPRRGYVVLLVTKGKKGDCTIYTTCLGSKQAPMSCQRILL
VWHPFFGFVDIDFLTDRATHLSDCDSRPRSRVPPWPPLPGRPPP*
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mRNA from alignment at L-elsbetiae_contig9976:2217..3187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9976.18899.1 ID=mRNA_L-elsbetiae_contig9976.18899.1|Name=mRNA_L-elsbetiae_contig9976.18899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig9976:2217..3187- (Laminarionema elsbetiae ELsaHSoW15)
AAGGCTGATTTCGGAAGTTGGAAAGCCTGTAGCCCTCGCCGAGGTTATGT
TGTGTTACTAGTTACGAAGGGCAAAAAAGGCGATTGTACTATTTACACCA
CTTGCCTGGGATCAAAACAGGCTCCCATGTCATGTCAGCGGATACTACTG
GTGTGGCACCCTTTCTTTGGATTCGTGGACATCGATTTTCTCACTGACCG
AGCAACGCATTTGTCTGACTGCGACTCTCGACGTGAGATAATGCTGCAAC
AACACTTGAATTTTTTCAATTTTTTCCCCAGTAGCAGTTAACGAGTCTAC
AGCTGTCGTTGGATCCGTTCCCTGCCTACTGCTCCAAGCAACCAACCTGG
TGTATTTTCTCGAAGCGTTCCCGTGGAGGCTTTAAAAAAAGTAATATTTT
TTCTCTCACTGGAAGCGTATATTTGTGCATAAAAAACGTGTTTTAACACG
CGAAACATTATTTTCAGCACGTGTGTCGATCACGATACAACGACAGTAAC
ACAAGCGGACTCGCTTTCCTGTTCCATTCTGCCACAAGAATAAAATGTCG
TGAATGGTAATTAGTTTCGTGACGTTCTCCCCTGGGCTCGGTTTTGGGTG
TGTTGTCGGCAGGCGTTAAATTGAAGATGCTCTTGTACTTACTTGCCGCA
CGCTGCGTAACATGCACCGGTAAAAATAAATAATTACATGATCGGCCGCT
TTTTTTGTTGACCGTGGTGCGAAACGATTTTGTTCGGCATCGTTACCCGC
CCTAAGTTTGCAACAGCGGCTGACGTTGACTCTTTGCGTTTGTACCTGTC
GTCACTTTGCGCAGTACCACTCGGTCAGTGCTGCGCAGAACGGTTCTTAC
GCACGTCACTGATGTCACTTGTCTCTCTTGTTGCTTCTTTTCACCCACTT
GTTCCGCCGAATTGACAGCGCGTTCAAGGGTGCCGCCGTGGCCACCCCTG
CCCGGTCGTCCTCCGCCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9976:2217..3187-

>mRNA_L-elsbetiae_contig9976.18899.1 ID=mRNA_L-elsbetiae_contig9976.18899.1|Name=mRNA_L-elsbetiae_contig9976.18899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig9976:2217..3187- (Laminarionema elsbetiae ELsaHSoW15)
AAGGCTGATTTCGGAAGTTGGAAAGCCTGTAGCCCTCGCCGAGGTTATGT
TGTGTTACTAGTTACGAAGGGCAAAAAAGGCGATTGTACTATTTACACCA
CTTGCCTGGGATCAAAACAGGCTCCCATGTCATGTCAGCGGATACTACTG
GTGTGGCACCCTTTCTTTGGATTCGTGGACATCGATTTTCTCACTGACCG
AGCAACGCATTTGTCTGACTGCGACTCTCGACAAGGCTGATTTCGGAAGT
TGGAAAGCCTGTAGCCCTCGCCGAGGTTATGTTGTGTTACTAGTTACGAA
GGGCAAAAAAGGCGATTGTACTATTTACACCACTTGCCTGGGATCAAAAC
AGGCTCCCATGTCATGTCAGCGGATACTACTGGTGTGGCACCCTTTCTTT
GGATTCGTGGACATCGATTTTCTCACTGACCGAGCAACGCATTTGTCTGA
CTGCGACTCTCGACCGCGTTCAAGGGTGCCGCCGTGGCCACCCCTGCCCG
GTCGTCCTCCGCCATGACGCGTTCAAGGGTGCCGCCGTGGCCACCCCTGC
CCGGTCGTCCTCCGCCATGA
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