mRNA_L-elsbetiae_contig9974.18898.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9974.18898.1
Unique NamemRNA_L-elsbetiae_contig9974.18898.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9974.18898.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.510e-57
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 1 
Query:    1 VLGAPRGTADNQVGLDEQIFASQALLYKCRRRRTPINGDDVGRLLSLALGFTGRGLRAVLVQLCLGICACAVRHAGWEASKVVPDMVLYCQKASEGAVHGDLGPRVLMLELLT 339
            VLGAPRG ADNQVGL+EQIFASQALLYKCRRRR  I+GDDVG LL LAL FTGRGLRAVLVQLCLG+CACAVRH+GW++SKVVPDMV+YCQKASE A HGD GPRVLMLELLT
Sbjct:   68 VLGAPRGVADNQVGLNEQIFASQALLYKCRRRRAAISGDDVGCLLQLALQFTGRGLRAVLVQLCLGVCACAVRHSGWDSSKVVPDMVMYCQKASEDAGHGDPGPRVLMLELLT 180
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BLAST of mRNA_L-elsbetiae_contig9974.18898.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 3.640e-50
Identity = 95/149 (63.76%), Postives = 103/149 (69.13%), Query Frame = 1 
Query:    1 VLGAPRGTADNQVGLDEQIFASQALLYKCRRRRTPINGDDVGRLLSLALGFTGRGLRAVLVQ------------------------------------LCLGICACAVRHAGWEASKVVPDMVLYCQKASEGAVHGDLGPRVLMLELLT 339
            VLGAPRG ADNQVGL+EQIFASQALLYKCRRR+  I+GDDVG LL LAL FTGRGLRAVLVQ                                    LCLG+CACAVRH+GW++SKVVPDMV+YCQKASE   HGD GPRVLMLELLT
Sbjct:   26 VLGAPRGVADNQVGLNEQIFASQALLYKCRRRKAAISGDDVGCLLQLALQFTGRGLRAVLVQEQNVSRPSLLPIATRPFLKSVSLGCLCKHGRNPELKLCLGVCACAVRHSGWDSSKVVPDMVMYCQKASEDTGHGDPGPRVLMLELLT 174
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BLAST of mRNA_L-elsbetiae_contig9974.18898.1 vs. uniprot
Match: A0A835Z5E4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.540e-9
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:   82 KCRRRRTPINGDDVGRLLSLALGFTGRG-LRAVLVQLCLGICACAVRHAGWEASKVVPDMVLYCQKASEGAVHGDLGPRVLMLELL 336
            + RRRR      DV  LLS+A     RG  RAV+V +CLG+CA A+R   W A +V+PD+   C    EG     +   VL LELL
Sbjct:   11 RSRRRRAAFEPADVQLLLSIAAAHAARGGRRAVVVHVCLGVCAVALRCGAWAAERVLPDLAGACGAGGEGXXXXXVRAEVL-LELL 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9974.18898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSA2_ECTSI1.510e-5785.84Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1R2_9PHAE3.640e-5063.76Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z5E4_9STRA5.540e-943.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9974contigL-elsbetiae_contig9974:6005..7178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue2.8e-49
Seed eggNOG ortholog2880.D7FSA2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
Ec32 ortholog descriptionExportin-1/Importin-beta-like
Ec32 orthologEc-05_004800.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size343
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.4897816-CDS-L-elsbetiae_contig9974:6004..61901622817055.4897816-CDS-L-elsbetiae_contig9974:6004..6190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9974 6005..6190 +
1691684013.4780767-CDS-L-elsbetiae_contig9974:6004..61901691684013.4780767-CDS-L-elsbetiae_contig9974:6004..6190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9974 6005..6190 +
1622817055.5005274-CDS-L-elsbetiae_contig9974:7023..71761622817055.5005274-CDS-L-elsbetiae_contig9974:7023..7176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9974 7024..7176 +
1691684013.4905553-CDS-L-elsbetiae_contig9974:7023..71761691684013.4905553-CDS-L-elsbetiae_contig9974:7023..7176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9974 7024..7176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9974.18898.1prot_L-elsbetiae_contig9974.18898.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9974 6005..7176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9974.18898.1

>prot_L-elsbetiae_contig9974.18898.1 ID=prot_L-elsbetiae_contig9974.18898.1|Name=mRNA_L-elsbetiae_contig9974.18898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
VLGAPRGTADNQVGLDEQIFASQALLYKCRRRRTPINGDDVGRLLSLALG
FTGRGLRAVLVQLCLGICACAVRHAGWEASKVVPDMVLYCQKASEGAVHG
DLGPRVLMLELLT
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mRNA from alignment at L-elsbetiae_contig9974:6005..7178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9974.18898.1 ID=mRNA_L-elsbetiae_contig9974.18898.1|Name=mRNA_L-elsbetiae_contig9974.18898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1174bp|location=Sequence derived from alignment at L-elsbetiae_contig9974:6005..7178+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGGGAGCGCCGAGGGGAACCGCGGACAACCAGGTTGGCCTCGACGA
GCAGATCTTCGCGAGCCAGGCACTGCTGTACAAGTGCCGGCGCCGGAGAA
CGCCCATCAACGGGGACGACGTCGGCCGCCTGCTGAGCCTGGCCCTGGGC
TTCACCGGCCGGGGTCTGCGAGCCGTGCTTGTCCAGGTGGGGGGAGGGGG
GGGGGGGGGACGTGCAGGGCGGGGGGGGGGGGATAACGGGGNNNNNNNNN
GGGGCGGCGCCGCGCGGCCGGGGGCGCGTGTGCGCGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGAATAACGTGTTCCTGTTTTTGGCCGC
GTGCGCTGACTATGCACGTTGTATGGTGATGGAGATGGAGATGGAGATGA
AAAGGTCAGGTTTTTGCTGGAGACGGAGGTGAAGGTGTGGAGGTGGAGGT
GATGAAGGCTTGGGGGGTTTCGTGTGTATTTACGTGCGTGAAACCTGGGT
CCGGAGCGGTCAAGCTGTCCTCCTGTGGAGAAGAAGGCGCCGTTGGTTTT
GGTTGGCCGTCTGCCTGGGTGTGGTGTGGGCGATCTTTCGGGAAGGGGGG
AGGGGAGAGGGGGGGGCTTATTCTGCGCTCCCTCCCCCACTTGGCCGTCA
TCGACGACATCCGGGCGCCGCCAGACGGCAACAGCCAACCCCTTTTGGTG
TGTCACAGCTTGGAAGATACGCCTGCCTGACTCTCGGCACTCACTGAGCC
CCCAAACCCCCAAACCCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCACAGCCCCCCCCCCCCCCGCCCCCCCGGGGGGGCGGCGCCCCGGGGG
GGNNNNNNNNNNCCCCCCCCTTTTGGTTGTGCCCACCCGGGAAGATCCCC
CTCCCTCCCCCCCGGCCCCCCCCGCCCCCCCAACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCTCCCAGCTGTGCCTCGGAATATGCGCCTGCGCCGTGC
GGCACGCGGGCTGGGAAGCCTCGAAGGTGGTGCCCGACATGGTTCTGTAC
TGCCAGAAGGCGTCCGAGGGTGCGGTGCACGGCGACCTGGGGCCCCGCGT
GCTCATGCTTGAGCTTCTTACAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9974:6005..7178+

>mRNA_L-elsbetiae_contig9974.18898.1 ID=mRNA_L-elsbetiae_contig9974.18898.1|Name=mRNA_L-elsbetiae_contig9974.18898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig9974:6005..7178+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGGGAGCGCCGAGGGGAACCGCGGACAACCAGGTTGGCCTCGACGA
GCAGATCTTCGCGAGCCAGGCACTGCTGTACAAGTGCCGGCGCCGGAGAA
CGCCCATCAACGGGGACGACGTCGGCCGCCTGCTGAGCCTGGCCCTGGGC
TTCACCGGCCGGGGTCTGCGAGCCGTGCTTGTCCAGGTGCTGGGAGCGCC
GAGGGGAACCGCGGACAACCAGGTTGGCCTCGACGAGCAGATCTTCGCGA
GCCAGGCACTGCTGTACAAGTGCCGGCGCCGGAGAACGCCCATCAACGGG
GACGACGTCGGCCGCCTGCTGAGCCTGGCCCTGGGCTTCACCGGCCGGGG
TCTGCGAGCCGTGCTTGTCCAGCTGTGCCTCGGAATATGCGCCTGCGCCG
TGCGGCACGCGGGCTGGGAAGCCTCGAAGGTGGTGCCCGACATGGTTCTG
TACTGCCAGAAGGCGTCCGAGGGTGCGGTGCACGGCGACCTGGGGCCCCG
CGTGCTCATGCTTGAGCTTCTTACACTGTGCCTCGGAATATGCGCCTGCG
CCGTGCGGCACGCGGGCTGGGAAGCCTCGAAGGTGGTGCCCGACATGGTT
CTGTACTGCCAGAAGGCGTCCGAGGGTGCGGTGCACGGCGACCTGGGGCC
CCGCGTGCTCATGCTTGAGCTTCTTACA
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