mRNA_L-elsbetiae_contig9942.18873.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9942.18873.1
Unique NamemRNA_L-elsbetiae_contig9942.18873.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9942.18873.1 vs. uniprot
Match: A0A6H5K704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K704_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.190e-20
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = -1 
Query:    1 ITWSAGQNLSHRRGY-QASDFGGDSAAGSVYELQTPDNDGNDMEHTYNDDGCVDSVAASSPGAYSIYSHYTTGGGMF 228
            I WSAGQN+ HRR + Q+S+ G DSAAGSVYELQ P     D+EH+Y+ DG  DSVAASSPGAYS+YSHYT GGG +
Sbjct:  443 IVWSAGQNMGHRRSFDQSSEIGDDSAAGSVYELQPP---AEDLEHSYHQDGYDDSVAASSPGAYSMYSHYTAGGGTY 516
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9942.18873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K704_9PHAE2.190e-2066.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9942contigL-elsbetiae_contig9942:1353..2000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size649
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817053.046357-CDS-L-elsbetiae_contig9942:1352..20001622817053.046357-CDS-L-elsbetiae_contig9942:1352..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9942 1353..2000 +
1691684011.6442204-CDS-L-elsbetiae_contig9942:1352..20001691684011.6442204-CDS-L-elsbetiae_contig9942:1352..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9942 1353..2000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9942.18873.1prot_L-elsbetiae_contig9942.18873.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9942 1353..2000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9942.18873.1

>prot_L-elsbetiae_contig9942.18873.1 ID=prot_L-elsbetiae_contig9942.18873.1|Name=mRNA_L-elsbetiae_contig9942.18873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
EHAPTRGVVAVYAVRAGGGGRHAVDAPVVVVRVLHVVAVVVWGLQLVHGP
GSAVPAEVRRLVPPAVAEVLPRRPGDASLAFAFEAGSAGPLLLLLLLGPR
GPALRRRTPGPPGTSCGPSFSDHAAAEDVSERGGRADVHVVHSAAAATAL
RARSGRRRRSGGRHRGRRHGVLAQLGAGELGSHLQHRGVRRRRSRGAPLA
AGVPASAPRAAARRED
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mRNA from alignment at L-elsbetiae_contig9942:1353..2000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9942.18873.1 ID=mRNA_L-elsbetiae_contig9942.18873.1|Name=mRNA_L-elsbetiae_contig9942.18873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig9942:1353..2000+ (Laminarionema elsbetiae ELsaHSoW15)
GAACATGCCCCCACCCGTGGTGTAGTGGCTGTATATGCTGTACGCGCCGG
GGGAGGAGGCCGCCACGCTGTCGACGCACCCGTCGTCGTTGTACGTGTGC
TCCATGTCGTTGCCGTCGTTGTCTGGGGTCTGCAGCTCGTACACGGACCC
GGCAGCGCTGTCCCCGCCGAAGTCCGACGCCTGGTACCCCCGGCGGTGGC
TGAGGTTCTGCCCCGCCGACCAGGTGATGCCTCCCTCGCCTTCGCCTTCG
AGGCCGGCTCCGCGGGCCCCCTGCTGCTGCTGCTGCTTCTGGGCCCGCGA
GGGCCGGCGCTTCGGCGGCGTACCCCGGGCCCCCCGGGGACCTCCTGCGG
GCCCTCCTTCTCCGACCACGCCGCTGCTGAGGACGTTAGCGAACGCGGTG
GGCGAGCCGATGTCCACGTCGTGCATTCCGCTGCCGCCGCCACCGCCCTG
CGAGCGCGAAGTGGCCGCCGCCGCCGAAGCGGCGGCCGCCACCGCGGCCG
CCGCCATGGAGTCCTTGCGCAGCTCGGGGCTGGCGAACTTGGATCTCATC
TCCAGCACCGGGGGGTGCGCCGTCGTCGTAGCCGAGGTGCCCCCCTGGCT
GCTGGAGTTCCCGCCTCCGCCCCCCGCGCTGCTGCGCGTCGCGAAGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9942:1353..2000+

>mRNA_L-elsbetiae_contig9942.18873.1 ID=mRNA_L-elsbetiae_contig9942.18873.1|Name=mRNA_L-elsbetiae_contig9942.18873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig9942:1353..2000+ (Laminarionema elsbetiae ELsaHSoW15)
GAACATGCCCCCACCCGTGGTGTAGTGGCTGTATATGCTGTACGCGCCGG
GGGAGGAGGCCGCCACGCTGTCGACGCACCCGTCGTCGTTGTACGTGTGC
TCCATGTCGTTGCCGTCGTTGTCTGGGGTCTGCAGCTCGTACACGGACCC
GGCAGCGCTGTCCCCGCCGAAGTCCGACGCCTGGTACCCCCGGCGGTGGC
TGAGGTTCTGCCCCGCCGACCAGGTGATGCCTCCCTCGCCTTCGCCTTCG
AGGCCGGCTCCGCGGGCCCCCTGCTGCTGCTGCTGCTTCTGGGCCCGCGA
GGGCCGGCGCTTCGGCGGCGTACCCCGGGCCCCCCGGGGACCTCCTGCGG
GCCCTCCTTCTCCGACCACGCCGCTGCTGAGGACGTTAGCGAACGCGGTG
GGCGAGCCGATGTCCACGTCGTGCATTCCGCTGCCGCCGCCACCGCCCTG
CGAGCGCGAAGTGGCCGCCGCCGCCGAAGCGGCGGCCGCCACCGCGGCCG
CCGCCATGGAGTCCTTGCGCAGCTCGGGGCTGGCGAACTTGGATCTCATC
TCCAGCACCGGGGGGTGCGCCGTCGTCGTAGCCGAGGTGCCCCCCTGGCT
GCTGGAGTTCCCGCCTCCGCCCCCCGCGCTGCTGCGCGTCGCGAAGATGA
ACATGCCCCCACCCGTGGTGTAGTGGCTGTATATGCTGTACGCGCCGGGG
GAGGAGGCCGCCACGCTGTCGACGCACCCGTCGTCGTTGTACGTGTGCTC
CATGTCGTTGCCGTCGTTGTCTGGGGTCTGCAGCTCGTACACGGACCCGG
CAGCGCTGTCCCCGCCGAAGTCCGACGCCTGGTACCCCCGGCGGTGGCTG
AGGTTCTGCCCCGCCGACCAGGTGATGCCTCCCTCGCCTTCGCCTTCGAG
GCCGGCTCCGCGGGCCCCCTGCTGCTGCTGCTGCTTCTGGGCCCGCGAGG
GCCGGCGCTTCGGCGGCGTACCCCGGGCCCCCCGGGGACCTCCTGCGGGC
CCTCCTTCTCCGACCACGCCGCTGCTGAGGACGTTAGCGAACGCGGTGGG
CGAGCCGATGTCCACGTCGTGCATTCCGCTGCCGCCGCCACCGCCCTGCG
AGCGCGAAGTGGCCGCCGCCGCCGAAGCGGCGGCCGCCACCGCGGCCGCC
GCCATGGAGTCCTTGCGCAGCTCGGGGCTGGCGAACTTGGATCTCATCTC
CAGCACCGGGGGGTGCGCCGTCGTCGTAGCCGAGGTGCCCCCCTGGCTGC
TGGAGTTCCCGCCTCCGCCCCCCGCGCTGCTGCGCGTCGCGAAGAT
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