mRNA_L-elsbetiae_contig9930.18864.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9930.18864.1
Unique NamemRNA_L-elsbetiae_contig9930.18864.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9930.18864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9930contigL-elsbetiae_contig9930:5609..6193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size586
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.200421-UTR-L-elsbetiae_contig9930:5608..57581622817052.200421-UTR-L-elsbetiae_contig9930:5608..5758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9930 5609..5758 +
1691684011.109402-UTR-L-elsbetiae_contig9930:5608..57581691684011.109402-UTR-L-elsbetiae_contig9930:5608..5758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9930 5609..5758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.2149014-CDS-L-elsbetiae_contig9930:5758..61931622817052.2149014-CDS-L-elsbetiae_contig9930:5758..6193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9930 5759..6193 +
1691684011.123043-CDS-L-elsbetiae_contig9930:5758..61931691684011.123043-CDS-L-elsbetiae_contig9930:5758..6193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9930 5759..6193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9930.18864.1prot_L-elsbetiae_contig9930.18864.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9930 5759..6193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9930.18864.1

>prot_L-elsbetiae_contig9930.18864.1 ID=prot_L-elsbetiae_contig9930.18864.1|Name=mRNA_L-elsbetiae_contig9930.18864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MLFCQPRVLLNEVHAHALRTSPNRGHAKIVRMLPVKKMGLKTVKRIPTPI
EIAVPNTCSYGTDFKEEEIRTSSLFSATSTTWCTLKGARGYTSFLFGWVP
YSAPLYLTLFYFILCITFFSSARRAPCHKRASCHSSDKWSHKRIT
back to top

mRNA from alignment at L-elsbetiae_contig9930:5609..6193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9930.18864.1 ID=mRNA_L-elsbetiae_contig9930.18864.1|Name=mRNA_L-elsbetiae_contig9930.18864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=585bp|location=Sequence derived from alignment at L-elsbetiae_contig9930:5609..6193+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCCATGGAGCGCTGGAGGTCTTTGGAGACATAGTCTTCGACTGAGCAA
CCCTTATAAGACCCTTGGAGGAACATAGTCGGGGCACAGCAGGAGCAGTG
CACAAGAGCTTTCGGTTGGGAGAACTTTTGCGTTTTCAAACCCTCTCAAA
ATGCTTTTCTGTCAACCTCGGGTTTTGCTGAACGAGGTACACGCACACGC
CTTGCGAACCAGCCCAAACAGAGGACACGCGAAGATAGTCAGGATGTTAC
CCGTCAAGAAAATGGGGCTGAAGACAGTCAAACGGATCCCGACACCCATA
GAAATTGCGGTGCCAAACACGTGTTCTTATGGTACTGATTTCAAAGAGGA
AGAAATCAGAACCAGCAGTCTGTTCTCCGCAACTTCAACTACGTGGTGCA
CCCTTAAAGGGGCGAGAGGCTACACTTCGTTTTTGTTTGGTTGGGTCCCG
TACTCAGCACCTCTGTATTTGACTCTGTTTTATTTTATTCTGTGCATCAC
ATTTTTTTCCAGCGCTCGAAGGGCTCCTTGCCACAAGAGGGCATCTTGCC
ATAGCTCTGACAAGTGGTCGCATAAAAGGATTACT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9930:5609..6193+

>mRNA_L-elsbetiae_contig9930.18864.1 ID=mRNA_L-elsbetiae_contig9930.18864.1|Name=mRNA_L-elsbetiae_contig9930.18864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig9930:5609..6193+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTTCTGTCAACCTCGGGTTTTGCTGAACGAGGTACACGCACACGC
CTTGCGAACCAGCCCAAACAGAGGACACGCGAAGATAGTCAGGATGTTAC
CCGTCAAGAAAATGGGGCTGAAGACAGTCAAACGGATCCCGACACCCATA
GAAATTGCGGTGCCAAACACGTGTTCTTATGGTACTGATTTCAAAGAGGA
AGAAATCAGAACCAGCAGTCTGTTCTCCGCAACTTCAACTACGTGGTGCA
CCCTTAAAGGGGCGAGAGGCTACACTTCGTTTTTGTTTGGTTGGGTCCCG
TACTCAGCACCTCTGTATTTGACTCTGTTTTATTTTATTCTGTGCATCAC
ATTTTTTTCCAGCGCTCGAAGGGCTCCTTGCCACAAGAGGGCATCTTGCC
ATAGCTCTGACAAGTGGTCGCATAAAAGGATTACTATGCTTTTCTGTCAA
CCTCGGGTTTTGCTGAACGAGGTACACGCACACGCCTTGCGAACCAGCCC
AAACAGAGGACACGCGAAGATAGTCAGGATGTTACCCGTCAAGAAAATGG
GGCTGAAGACAGTCAAACGGATCCCGACACCCATAGAAATTGCGGTGCCA
AACACGTGTTCTTATGGTACTGATTTCAAAGAGGAAGAAATCAGAACCAG
CAGTCTGTTCTCCGCAACTTCAACTACGTGGTGCACCCTTAAAGGGGCGA
GAGGCTACACTTCGTTTTTGTTTGGTTGGGTCCCGTACTCAGCACCTCTG
TATTTGACTCTGTTTTATTTTATTCTGTGCATCACATTTTTTTCCAGCGC
TCGAAGGGCTCCTTGCCACAAGAGGGCATCTTGCCATAGCTCTGACAAGT
GGTCGCATAAAAGGATTACT
back to top