mRNA_L-elsbetiae_contig9929.18863.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9929.18863.1
Unique NamemRNA_L-elsbetiae_contig9929.18863.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9929.18863.1 vs. uniprot
Match: D8LKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN9_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 3.410e-66
Identity = 132/262 (50.38%), Postives = 177/262 (67.56%), Query Frame = 1 
Query:    1 SVYSGSASVVFFVAAAFGNLYGSGMLLALYCTAMPLLLMGIADMLELWVDTLPSQLLPADSFAIKVMHLAEEKSVFFWVGRVGSGGLAAFGLSASFLLPGETVIRCVDLMTGAAAACAFVGFNFVGFHLTTVINNAKRQASPSALAFYDCAIHTLRIQVAALSTSAVVWVVSVVSLEPQLGGFGARSPIIPISIMIADAYAGFGLAVHFAKVGPARGAPTSHGAASP----------AASRMHAAKAAISEVGAEVRQSLSL 756
            S YSGSAS++F VAAA G LY +G L AL     PL+ M +A M++LW++TLP+QL+PADS AIKV+ LAE+K++  WVG +   GL  FGL   F+L    V+R V+L+         + FNFVG +LT +IN AKR A PS++AFY+ AIHTLRIQV AL+ + VVW+V VV+LEP LGG GAR+P+IP +IM+ DA+ GF LAVHFAK+GP     TS  + +P          AAS    A+A +S+VGA+  + +S+
Sbjct:  102 SAYSGSASIIFCVAAADGGLYANG-LKALCSITFPLVCMAVAHMIDLWINTLPTQLVPADSVAIKVIKLAEKKNLCLWVGWLAIAGLTPFGLLTFFVLDVIKVVRAVNLV---------ICFNFVGVNLTKIINGAKRNAGPSSIAFYEQAIHTLRIQVFALTVAGVVWIVMVVALEPYLGGVGARTPVIPFTIMLLDAFVGFSLAVHFAKIGP-----TSRQSFNPLNQLGTQMNSAASPWGGARAILSDVGAKASEVMSM 348
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9929.18863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKN9_ECTSI3.410e-6650.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9929contigL-elsbetiae_contig9929:83..3662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.9e-06
Seed eggNOG ortholog2880.D7FP23
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain of unknown function (DUF305)
EggNOG OGs2C8JY@1,2S34M@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_001020.1
Exons5
Model size1100
Cds size816
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.0880792-UTR-L-elsbetiae_contig9929:82..2941622817052.0880792-UTR-L-elsbetiae_contig9929:82..294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9929 83..294 -
1691684011.0313573-UTR-L-elsbetiae_contig9929:82..2941691684011.0313573-UTR-L-elsbetiae_contig9929:82..294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9929 83..294 -
1622817052.1601422-UTR-L-elsbetiae_contig9929:3590..36621622817052.1601422-UTR-L-elsbetiae_contig9929:3590..3662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9929 3591..3662 -
1691684011.0988362-UTR-L-elsbetiae_contig9929:3590..36621691684011.0988362-UTR-L-elsbetiae_contig9929:3590..3662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9929 3591..3662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.099261-CDS-L-elsbetiae_contig9929:294..5971622817052.099261-CDS-L-elsbetiae_contig9929:294..597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 295..597 -
1691684011.0452511-CDS-L-elsbetiae_contig9929:294..5971691684011.0452511-CDS-L-elsbetiae_contig9929:294..597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 295..597 -
1622817052.1101172-CDS-L-elsbetiae_contig9929:1216..13841622817052.1101172-CDS-L-elsbetiae_contig9929:1216..1384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 1217..1384 -
1691684011.0587497-CDS-L-elsbetiae_contig9929:1216..13841691684011.0587497-CDS-L-elsbetiae_contig9929:1216..1384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 1217..1384 -
1622817052.1222856-CDS-L-elsbetiae_contig9929:2085..21481622817052.1222856-CDS-L-elsbetiae_contig9929:2085..2148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 2086..2148 -
1691684011.0671833-CDS-L-elsbetiae_contig9929:2085..21481691684011.0671833-CDS-L-elsbetiae_contig9929:2085..2148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 2086..2148 -
1622817052.1366708-CDS-L-elsbetiae_contig9929:2797..29861622817052.1366708-CDS-L-elsbetiae_contig9929:2797..2986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 2798..2986 -
1691684011.0781972-CDS-L-elsbetiae_contig9929:2797..29861691684011.0781972-CDS-L-elsbetiae_contig9929:2797..2986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 2798..2986 -
1622817052.1478972-CDS-L-elsbetiae_contig9929:3497..35901622817052.1478972-CDS-L-elsbetiae_contig9929:3497..3590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 3498..3590 -
1691684011.0895848-CDS-L-elsbetiae_contig9929:3497..35901691684011.0895848-CDS-L-elsbetiae_contig9929:3497..3590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9929 3498..3590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9929.18863.1prot_L-elsbetiae_contig9929.18863.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9929 295..3590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9929.18863.1

>prot_L-elsbetiae_contig9929.18863.1 ID=prot_L-elsbetiae_contig9929.18863.1|Name=mRNA_L-elsbetiae_contig9929.18863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
MLLALYCTAMPLLLMGIADMLELWVDTLPSQLLPADSFAIKVMHLAEEKS
VFFWVGRVGSGGLAAFGLSASFLLPGETVIRCVDLMTGAAAACAFVGFNF
VGFHLTTVINNAKRQASPSALAFYDCAIHTLRIQVAALSTSAVVWVVSVV
SLEPQLGGFGARSPIIPISIMIADAYAGFGLAVHFAKVGPARGAPTSHGA
ASPAASRMHAAKAAISEVGAEVRQSLSLSLFTGKTATITHMTVKPAPPAA
SSSAPGGKRVVPTMEDIESVE*
back to top

mRNA from alignment at L-elsbetiae_contig9929:83..3662-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9929.18863.1 ID=mRNA_L-elsbetiae_contig9929.18863.1|Name=mRNA_L-elsbetiae_contig9929.18863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3580bp|location=Sequence derived from alignment at L-elsbetiae_contig9929:83..3662- (Laminarionema elsbetiae ELsaHSoW15)
AGCGTCTATAGTGGGAGCGCTTCGGTCGTCTTCTTCGTGGCGGCAGCTTT
CGGCAACCTCTACGGCAGCGGGATGCTCCTAGCGTTGTACTGCACAGCGA
TGCCTCTCCTCTTGATGGGTATTGCGGACATGCTAGAGCTTTGGGTGGAC
ACCCTACCGTCGCAGGTGACGTCCGTAATTGTGCGGGCTATCGTCGCACA
CCCCCTGTACCGACTGTTAGAGCTCGGTTACTTCGTCCGAAAAGGGCGCC
AACGCCAAACGACACGTTTTCGAACAGCTATCGGCGTGATCTGTCCAACG
CCACCCTTTCCGGCACTGACACTCTTCTTGCCGTGGAGTAATCGAGCTTT
GAAAATCGTCCCAGGGGGTGTGCGATAGCCCGCACAATTACGGTGCAAAA
GAAGACACATGTTTCCCTTCCCCGGTTGCCTATTGTACTGACATGCGTGG
ACAGGTTCTACATGCCCTTGTAGGAAGCTTATTCTCATGTCAAAAGTATG
CCAGAGGGTAACAGGGTTCCTGTTACCTTTTACAAGACGAGATGCAGCCT
GGATGTTGCATTCATTTACTGCTGTGGATGCGTTGCAAACCAATATTGAA
AAGGAGACAATGAACGTTGACCAACACGGGCAAACAACTGGCCACCTTGC
CCCCGCACCATAAACCGTGGTTCCAGCTGTTGCCGGCCGATAGTTTCGCC
ATCAAGGTCATGCACTTGGCGGAGGAGAAAAGCGTTTTCTTTTGGGTGGG
TAGAGTGGGCTCGGGAGGCCTCGCAGCTTTCGGGCTTTCGGCAAGCTTTT
TGCTTCCAGGCGAGACGGTCATCAGGTGTGTCGACCTCATGACGGGGGCG
GCTGCTGCATGTGCGGTGAGAATGAGATTCCACGGGGGTCTTGGCGAGTA
CCAGTACACGTTAGAAACAGAGAGAGGCGTTTTGGTGTTTCTCCCCCTTC
CGTGGCTGCAAGGTTGGGTGGTAGTCGTCAAAGGAAAGGGATGTCCAGCA
CGCAGAAATTGGTCACCTGCGTTGGCCTGTGTGCCTTGTACACGGTAGCG
TTTTGTTGTTGGTATTGCTATTTTGACAGGGAAAACAGTTAGTCAAAAAT
GAAACCTATCCCACATCGAGATGGGATTCCGTGAGATTCAATGGCGGTAT
TCCATATAGTGACGTAATATAACAGTTAATCAAAAATGGAACCTAACCCA
TATCGAGACGGGATTCCGTGAGATTCAATGGCGGTATTCCATATAGTGAC
GTAATATTGGGCCGGCCGATTACAAGAGCACCTAACATATAAGAAGAAAT
AACCATCTCCCCTTGCAGGTCTCTGCCAGGTCAAACACCATGTATTCCGT
AGTGAAACCCTCGTTGGTGCTAGTTTGTTAATTACTAGACTACTGCTGCT
GTTTTTGCTTCGATATTTGAAATCTTGTTCTGATTTTTCCTTCGCCTGTG
CTGATCCAGCTGAAAAGGATGCCCCGTGCTCACACACTACCGTCCATTAA
TCCACGTGTACCAGTTTGTTGGCTTCAATTTCGTCGGCTTCCATCTCACC
ACCGTCATCAACAACGCCAAGCGCCAGGTAAACAGTCAGTGCCCGGCATT
TTGTGTGATGGAGAGATTGGTACTAGATATATCTAGACTAGTCGAGGGGC
GTTGAATCTCCCCTGCAACTAACTGCAGATGTACCTCGTGTTCCACTGTA
TTGGCTTTGAATCCAATCGAAATAAGTAAAACGCCCGCCCTTCCCAGACC
CACCGCCGCGAGGGGGGGTGATGGTGCTTGCAGGCTTCCACGTGAAACAG
TTAGTGTCAACGCCATCTCTTGTTCTGTAGAATGGCCATTTCCAAGCACC
CACGGAAAGCTGCCCATTACCTCTCGGTTGTGTGAATATGCCACAGGGCC
CATCTTCGCGTCCTCGGGCTACTACCTACCGTACCCGCAAGCCCCTGTGT
AAATAGTAAATACGCCGGATTAACGCCAAATGGAGGGGCAGTTATCTCCG
CATTTCACGATTGGCGGTACAGTGCATCTCCACTTGCGTGTTTATTCCCG
AGGTAGGGATGGACGGCTCTTCCCCTGTGGTGTTCACTCCCCGCGCGGTG
CCTCAACTTAGCTTGGCTAGTCACGAGGCACCCCTCGTCTCTCTTGATCT
ATGCCAAACCTTATTTGCGATAACTCTTCTAATAGTATCTATGTAGCCCC
TTTTGCAAGCTGGTAAGGACTCCCAACTACCAAAACCACTAGACTGACCG
CATCAAAGCGTCGACGACGTGTGTACAGGCGAGCCCGTCAGCCTTGGCGT
TCTACGATTGTGCCATCCATACCCTGAGGATCCAAGTTGCTGCCTTAAGT
ACTTCGGCGGTCGTCTGGGTGGTCTCGGTAGTGTCTCTCGAGCCACAGCT
AGGCGGATTTGGGGCGCGGTCACCGATCATTCCGATATCGATTATGGTGA
GCGAGTCCAATATTCGTGCTGGGAGAGGTATAAAACAACGGAGCATGCTC
TGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGAAGGCGACCA
GTGGGGTAGACGACGAATAAGCAATAGTGGGAGGGAAAAAAAAAAGCAAA
CTGGGTCTGTTCCTTGCTCCTGTATCTGCATAGACATGCTTTTGCCATTA
GACTACTTAAAGGGAGCCGGAGTTTCTATGTCGGAAGGAAAATGCGAAAT
GCAGTCAGAGGGGTGGAGAAACAGGCGATAGAACGATGACCCACGATAAA
TCACCAGACCCCCCCCTGGACATTCCCATCGAACAGTTAGCAGCAGCAAA
CGTTCTGGGCCAGCGCAAAAAAGATATTGAGCCAGCGACGCATCACCGTT
CGTTACCGTTCAAGAATAGACTACTTGCTGGTTTCAGGCCCCGATAAAGA
CTATGCTGGTTTGGTGTTCGCCCGCACGTCGCCCAAAGTATGACTTCCCG
AGGCGGGTGGTTGCCTTGGGCGTATTCTCGTATGTAACTTTCCCCCGCCT
CGTCTGTTTGATTCGATCCTGCTTCGCTCCGACGTTGACGCGGCTGCCGT
CGGCCGTGACATCAGATAGCAGATGCCTATGCGGGTTTCGGCTTGGCGGT
TCACTTCGCAAAAGTTGGCCCCGCGAGGGGCGCGCCTACCTCTCACGGCG
CTGCCAGCCCGGCTGCATCGCGAATGCATGCGGCGAAGGCGGCAATATCC
GAGGTCGGGGCCGAGGTTCGACAAAGTCTAAGTCTTAGCCTTTTCACCGG
CAAGACAGCCACCATCACCCACATGACCGTAAAACCCGCACCCCCTGCCG
CCTCCTCATCGGCACCAGGAGGGAAGCGTGTAGTCCCGACAATGGAGGAT
ATCGAGAGTGTTGAATGACTGCAGGAAAACATGCACGTTTCCCCCGGATG
ATGTGCCGGGTGTAGCTATATCTAGATAAGAATGTCAGATGTTGACGCCA
AGAAAACGAGCGATACTAGTCTACTGCTGTGGTATGAAAACAGCATTTTA
TACATATGTTATACGAAGCAGCAAATATGGAGGGAGCATCTTCGGACAGA
GTGCAAGTAGATACATCATGGTGTACTACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9929:83..3662-

>mRNA_L-elsbetiae_contig9929.18863.1 ID=mRNA_L-elsbetiae_contig9929.18863.1|Name=mRNA_L-elsbetiae_contig9929.18863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig9929:83..3662- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCTAGCGTTGTACTGCACAGCGATGCCTCTCCTCTTGATGGGTAT
TGCGGACATGCTAGAGCTTTGGGTGGACACCCTACCGTCGCAGATGCTCC
TAGCGTTGTACTGCACAGCGATGCCTCTCCTCTTGATGGGTATTGCGGAC
ATGCTAGAGCTTTGGGTGGACACCCTACCGTCGCAGCTGTTGCCGGCCGA
TAGTTTCGCCATCAAGGTCATGCACTTGGCGGAGGAGAAAAGCGTTTTCT
TTTGGGTGGGTAGAGTGGGCTCGGGAGGCCTCGCAGCTTTCGGGCTTTCG
GCAAGCTTTTTGCTTCCAGGCGAGACGGTCATCAGGTGTGTCGACCTCAT
GACGGGGGCGGCTGCTGCATGTGCGCTGTTGCCGGCCGATAGTTTCGCCA
TCAAGGTCATGCACTTGGCGGAGGAGAAAAGCGTTTTCTTTTGGGTGGGT
AGAGTGGGCTCGGGAGGCCTCGCAGCTTTCGGGCTTTCGGCAAGCTTTTT
GCTTCCAGGCGAGACGGTCATCAGGTGTGTCGACCTCATGACGGGGGCGG
CTGCTGCATGTGCGTTTGTTGGCTTCAATTTCGTCGGCTTCCATCTCACC
ACCGTCATCAACAACGCCAAGCGCCAGTTTGTTGGCTTCAATTTCGTCGG
CTTCCATCTCACCACCGTCATCAACAACGCCAAGCGCCAGGCGAGCCCGT
CAGCCTTGGCGTTCTACGATTGTGCCATCCATACCCTGAGGATCCAAGTT
GCTGCCTTAAGTACTTCGGCGGTCGTCTGGGTGGTCTCGGTAGTGTCTCT
CGAGCCACAGCTAGGCGGATTTGGGGCGCGGTCACCGATCATTCCGATAT
CGATTATGGCGAGCCCGTCAGCCTTGGCGTTCTACGATTGTGCCATCCAT
ACCCTGAGGATCCAAGTTGCTGCCTTAAGTACTTCGGCGGTCGTCTGGGT
GGTCTCGGTAGTGTCTCTCGAGCCACAGCTAGGCGGATTTGGGGCGCGGT
CACCGATCATTCCGATATCGATTATGATAGCAGATGCCTATGCGGGTTTC
GGCTTGGCGGTTCACTTCGCAAAAGTTGGCCCCGCGAGGGGCGCGCCTAC
CTCTCACGGCGCTGCCAGCCCGGCTGCATCGCGAATGCATGCGGCGAAGG
CGGCAATATCCGAGGTCGGGGCCGAGGTTCGACAAAGTCTAAGTCTTAGC
CTTTTCACCGGCAAGACAGCCACCATCACCCACATGACCGTAAAACCCGC
ACCCCCTGCCGCCTCCTCATCGGCACCAGGAGGGAAGCGTGTAGTCCCGA
CAATGGAGGATATCGAGAGTGTTGAATGAATAGCAGATGCCTATGCGGGT
TTCGGCTTGGCGGTTCACTTCGCAAAAGTTGGCCCCGCGAGGGGCGCGCC
TACCTCTCACGGCGCTGCCAGCCCGGCTGCATCGCGAATGCATGCGGCGA
AGGCGGCAATATCCGAGGTCGGGGCCGAGGTTCGACAAAGTCTAAGTCTT
AGCCTTTTCACCGGCAAGACAGCCACCATCACCCACATGACCGTAAAACC
CGCACCCCCTGCCGCCTCCTCATCGGCACCAGGAGGGAAGCGTGTAGTCC
CGACAATGGAGGATATCGAGAGTGTTGAATGA
back to top