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Homology
BLAST of mRNA_L-elsbetiae_contig992.18859.1 vs. uniprot
Match: A0A6H5L8X0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8X0_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.250e-42 Identity = 88/176 (50.00%), Postives = 117/176 (66.48%), Query Frame = 1
Query: 1 MSKGNPMENILEQMQQEGFS---HAPGEEMTHVAGVSFVDNVGLSLGAAPQEEAGHAGTYRHIANCANELETLVLHQEEWQERQEHLESGQEGGQXXXXXHEHDDFASYQNYQSYSSGXXXXXXXXXXXXXHGAHSSTRLRGDDRHIVIERNSHNEVAAVVLQKKPEHDSEEVAGE 519
M N M IL Q+Q+ + APGEEMTHV+GVSFVD+VGLSLGAAP+EEAG AG YRHIANCA LE LVL ++E ER+ +S ++GG H+H+++A+Y +Q++++G A +STRL+G+DRHIVI++ S NEVA VVL+KKP H + GE
Sbjct: 1 MGDENAMNEILRQLQEAADAAAESAPGEEMTHVSGVSFVDSVGLSLGAAPKEEAGRAGAYRHIANCAEALEALVLQEDERLERESREQSSRQGG-----GHDHEEYANYHQHQNFTNGGGHHASSGH------ARASTRLKGEDRHIVIQKKSANEVAVVVLEKKPSHQGRQGEGE 165
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-07_006360.1 |
| Exons | 4 |
| Model size | 1239 |
| Cds size | 543 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817051.7733793-UTR-L-elsbetiae_contig992:22965..23393 | 1622817051.7733793-UTR-L-elsbetiae_contig992:22965..23393 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig992 22966..23393 - |
| 1691684010.8084998-UTR-L-elsbetiae_contig992:22965..23393 | 1691684010.8084998-UTR-L-elsbetiae_contig992:22965..23393 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig992 22966..23393 - |
| 1622817051.7850375-UTR-L-elsbetiae_contig992:23562..23830 | 1622817051.7850375-UTR-L-elsbetiae_contig992:23562..23830 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig992 23563..23830 - |
| 1691684010.818772-UTR-L-elsbetiae_contig992:23562..23830 | 1691684010.818772-UTR-L-elsbetiae_contig992:23562..23830 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig992 23563..23830 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817051.797736-CDS-L-elsbetiae_contig992:23830..23948 | 1622817051.797736-CDS-L-elsbetiae_contig992:23830..23948 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig992 23831..23948 - |
| 1691684010.8278043-CDS-L-elsbetiae_contig992:23830..23948 | 1691684010.8278043-CDS-L-elsbetiae_contig992:23830..23948 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig992 23831..23948 - |
| 1622817051.8090746-CDS-L-elsbetiae_contig992:24549..24841 | 1622817051.8090746-CDS-L-elsbetiae_contig992:24549..24841 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig992 24550..24841 - |
| 1691684010.8369236-CDS-L-elsbetiae_contig992:24549..24841 | 1691684010.8369236-CDS-L-elsbetiae_contig992:24549..24841 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig992 24550..24841 - |
| 1622817051.8204854-CDS-L-elsbetiae_contig992:25800..25933 | 1622817051.8204854-CDS-L-elsbetiae_contig992:25800..25933 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig992 25801..25933 - |
| 1691684010.8458378-CDS-L-elsbetiae_contig992:25800..25933 | 1691684010.8458378-CDS-L-elsbetiae_contig992:25800..25933 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig992 25801..25933 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig992.18859.1 >prot_L-elsbetiae_contig992.18859.1 ID=prot_L-elsbetiae_contig992.18859.1|Name=mRNA_L-elsbetiae_contig992.18859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MSKGNPMENILEQMQQEGFSHAPGEEMTHVAGVSFVDNVGLSLGAAPQEE
AGHAGTYRHIANCANELETLVLHQEEWQERQEHLESGQEGGQGQGQGHEH
DDFASYQNYQSYSSGGGGHHQLHHHSSGHGAHSSTRLRGDDRHIVIERNS
HNEVAAVVLQKKPEHDSEEVAGEEGEDTSS* back to topmRNA from alignment at L-elsbetiae_contig992:22966..25933- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig992.18859.1 ID=mRNA_L-elsbetiae_contig992.18859.1|Name=mRNA_L-elsbetiae_contig992.18859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2968bp|location=Sequence derived from alignment at L-elsbetiae_contig992:22966..25933- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCAAGGGTAACCCCATGGAGAACATTCTGGAGCAGATGCAGCAGGA
GGGTTTTTCGCACGCACCGGGGGAGGAGATGACTCACGTCGCGGGAGTCT
CGTTTGTGGACAACGTCGGGCTAAGCTTGGGAGGTACGCATGCTTTGCGT
GTATGTCCTGTGACTGCATGTGTGTGTGATTGCCGCACGTGTGTGTCCTG
CTGTGTTTGTACTGCATAAACACAAGTTTTCAGATGTCGCTCGTGACCGG
AACAATTCAGGTGGTGAGGCAAGAGAACAGTAGTGTTGATTGCTGTTCGA
GTTGCGCAACAACACTATGAGTTGCCGGGTCACACTAAAGAGCCAGGACT
GGCGTACGTCGCCACGTGCGTCGCCAGCCTGAATAGTCTACTGAAAAGCC
TGGTTCCAGTGCCCTTAAGTGGCTTCACCAACTGCTCACAGACCCTGCAC
CCAGGGAAAACTTGATCTATATATAGTCATATTCTTGTGTGTGGAGACGA
CACGTGCACACTATAGAATAGTGATGGCTTTGTTTTGCCGCTGTACTGCT
GCACTGCTGTAGCAGTCTCCTCTAGATAGCCTCGTCTCGCCGTACGTTTG
GTGAAGCGGTTCAGCCCTGCCGCTGCTGCCGCCGCCGCTGCTGCCGCCGC
AGCTGCTGCCGCTGCCACTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTG
CTGCTTCGTCTTTTGTTTTGTTCCGTTGTTTCGTGTGTCCGTGTGTATCG
GGGGGGTGATTTATGTTTATGTTGTTTTTTGCCTGGGCGTGGGGTTTCCC
TCTATGCGTTCACGGTATAAAATGGTGATTCATCTTTGGGATGGTCTTTG
ATGGACTCTATGTATAATAAATAGCCCATGGTTCCATCCCGATCGTGTAT
TCTCTAATTCATCCTCCGACCGATTCGGGTATGGAGATCAATGCCTGAGG
CTCACAGAGACACGGGCAAGGTGGTTCCTACAACAACAGCAGTACCCCAT
GTTTTAGGTGCGCACACGAACCCACGCTCCTCCGTCCCTCCTTTTATCGT
CGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTATGAACTTCAGCGGCGCCG
CAAGAGGAGGCGGGACACGCCGGCACGTACCGACATATAGCGAATTGTGC
GAACGAATTGGAAACGCTTGTGTTGCACCAGGAGGAATGGCAGGAAAGGC
AAGAGCACCTCGAGTCAGGGCAGGAGGGGGGGCAGGGGCAGGGGCAGGGG
CATGAACACGACGACTTCGCGAGCTATCAGAACTACCAGAGCTACTCCTC
GGGCGGCGGCGGGCACCACCAGCTGCACCACCACAGCAGCGGCCACGGCG
CCCATTCCAGCACACGCCTTAGGGGCGATGATAGGTGCGGTGTGGTGCAG
TGCAGTGCAGTGCAGTGCAGTCCGGTGTGGTTCTCGAGTTTGTACTGCTG
TTTCTGCAACTTAACACTCACAGTACTACTTCTAGTAGTTTTGGTCTTCG
AGTGCCCACGGCGACCAGCCCTTGTGACATGGGGTTTATTTAATTGTATA
TTCGGTTTCTGGCATGACATGGCATGGCATGGCATGACATGACATGGCAT
ATATTGTCGCGGCGACGACTTCTGAAGGTGGAAGTTGAGGTTAAGGTTGG
GTGTGACAGACGCTGGTCCGACAAGTTTTTTTTCGGCTTGTGAGACGTGA
CGGGTGCGCAAGGATACGAGAGGTTATGACGGAGTCGGCGATTTCTGTTG
ATGGACAACTGGCAGCGAGTGTGCCCGCAGCCCTCCTTCGCTGTTTACGT
ACAGCGATACTGCCGGCGTTTATTTCATCCACGTTGCTATATATATGTAT
AATTACGATCCACCCGCAAATCAGCGCAATCCAAATTCTGTCCTTAACAA
AAAAATTGCAAAATTGCACCACAATACTGACGTCTCCCCCCCCCCCCCCA
CCTACTCGCATTTTTTGTTGTTGTTGCCCTTGAAGGCATATTGTGATCGA
ACGAAATTCGCACAATGAAGTGGCCGCGGTGGTGCTCCAGAAGAAGCCAG
AACACGACAGCGAAGAAGTAGCGGGGGAGGAGGGCGAAGACACATCTTCG
TAACCTGTTAGGTGCCACCCATCTAATGTTTCGGCTTTGAGGCTTTTCTG
GCATATGGCCTCGTTTACCTTCTATCTTAGCATAGCTCGTTTTGGCAGTC
AGGGAAGGTGGGGGGAGGGGGTGGTTTTTAGAAGCACGACGCGTGGGAAT
CAGGAGGTGTTCACTCTTTCTGCCGTGTCTGCGTCTGTGTCTATCTGATT
TGTGTTTTTGGCTTCGAGGAGGAGGGTGGATGTTGACTAATTGATACCAT
ACATACCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCACCCCGCCGGGTT
GGGGGTGTTGTGTTTTTTTTGGTGGGGGGAGGGGGGGGGGGGGGGGGGGG
NNNNNNNNNNCTCCCGCAGCACCGACTAGAACGCCTACACCGGGCCCAAC
ACCAGCCCCGAGCCCGAGCCCAACACCGGCCCCAACACCCGTTTTGGCAC
CAGGTCTCGGTGTGTGTGTTCTGGTTTTATAGAGGAGAGGCGAGTCGGCG
GGGAGTTGGAGGTGTTACTGAGAGCAAATCCGTGTGGTTTGACACCTAAA
CGAGAACACGGTCCGGCTTTCTCGACTCTCGATTGCTTCAGTGGGCCCAA
CCTTGAGTCGGAAGACATGGAAAGGGTGCGACGGGGCTTTCGCTTTCTTG
GTGGGAATTGCTTTCTTGATACGTCGTCTATGAGACATGGGTTTTAGCCC
ATCTTGGGCGTGTTGCCGTTCGGCCCTAGTCTACCTGCCTGCTGTTTTAC
TGTCTTGTGCGCTGCTGTTTTTTTCTATTTTTGGCTGATTGTTGAGGCTG
AACCACGTGTTGATGATGCAAGTTCCAGCGGTAAGTAGACGGAAGTTCAC
ACAAGTGTGGAGCCCAAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig992:22966..25933- >mRNA_L-elsbetiae_contig992.18859.1 ID=mRNA_L-elsbetiae_contig992.18859.1|Name=mRNA_L-elsbetiae_contig992.18859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig992:22966..25933- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCAAGGGTAACCCCATGGAGAACATTCTGGAGCAGATGCAGCAGGA
GGGTTTTTCGCACGCACCGGGGGAGGAGATGACTCACGTCGCGGGAGTCT
CGTTTGTGGACAACGTCGGGCTAAGCTTGGGAGATGAGCAAGGGTAACCC
CATGGAGAACATTCTGGAGCAGATGCAGCAGGAGGGTTTTTCGCACGCAC
CGGGGGAGGAGATGACTCACGTCGCGGGAGTCTCGTTTGTGGACAACGTC
GGGCTAAGCTTGGGAGCGGCGCCGCAAGAGGAGGCGGGACACGCCGGCAC
GTACCGACATATAGCGAATTGTGCGAACGAATTGGAAACGCTTGTGTTGC
ACCAGGAGGAATGGCAGGAAAGGCAAGAGCACCTCGAGTCAGGGCAGGAG
GGGGGGCAGGGGCAGGGGCAGGGGCATGAACACGACGACTTCGCGAGCTA
TCAGAACTACCAGAGCTACTCCTCGGGCGGCGGCGGGCACCACCAGCTGC
ACCACCACAGCAGCGGCCACGGCGCCCATTCCAGCACACGCCTTAGGGGC
GATGATAGCGGCGCCGCAAGAGGAGGCGGGACACGCCGGCACGTACCGAC
ATATAGCGAATTGTGCGAACGAATTGGAAACGCTTGTGTTGCACCAGGAG
GAATGGCAGGAAAGGCAAGAGCACCTCGAGTCAGGGCAGGAGGGGGGGCA
GGGGCAGGGGCAGGGGCATGAACACGACGACTTCGCGAGCTATCAGAACT
ACCAGAGCTACTCCTCGGGCGGCGGCGGGCACCACCAGCTGCACCACCAC
AGCAGCGGCCACGGCGCCCATTCCAGCACACGCCTTAGGGGCGATGATAG
GCATATTGTGATCGAACGAAATTCGCACAATGAAGTGGCCGCGGTGGTGC
TCCAGAAGAAGCCAGAACACGACAGCGAAGAAGTAGCGGGGGAGGAGGGC
GAAGACACATCTTCGTAAGCATATTGTGATCGAACGAAATTCGCACAATG
AAGTGGCCGCGGTGGTGCTCCAGAAGAAGCCAGAACACGACAGCGAAGAA
GTAGCGGGGGAGGAGGGCGAAGACACATCTTCGTAA back to top
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