mRNA_L-elsbetiae_contig987.18811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig987.18811.1
Unique NamemRNA_L-elsbetiae_contig987.18811.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig987.18811.1 vs. uniprot
Match: A0A6H5K8L6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.710e-11
Identity = 47/111 (42.34%), Postives = 59/111 (53.15%), Query Frame = 3 
Query:   60 PEVHGGVGELCFWGIMDYACSLQGQTYSTAVCGVSRCADIFVKNPGLCRFTSWKHLAHCCLAYLALSGSPDKYEELRASYNSVVDNGDRKAPPLEAFRGMNCICGNTFCKS 392
            PEV  G+G L F  I  Y     G T   A   V  CA IFV+ PGLCRF+ W+HL+HC L  LA     + +EELR  YNSV      + P  +A+  M   C + FC+S
Sbjct:  442 PEVGVGIGGLIFNAISAYLDISTGSTKLGAE-KVKLCAKIFVRYPGLCRFSRWQHLSHCLLTVLATLEDAEPFEELRQVYNSVRTEDLVEVPEQQAWT-MVGFCNHIFCRS 550
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig987.18811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8L6_9PHAE2.710e-1142.34Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig987contigL-elsbetiae_contig987:18137..22623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2252
Cds size1191
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817047.1090417-UTR-L-elsbetiae_contig987:18136..191591622817047.1090417-UTR-L-elsbetiae_contig987:18136..19159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig987 18137..19159 -
1691684007.2428515-UTR-L-elsbetiae_contig987:18136..191591691684007.2428515-UTR-L-elsbetiae_contig987:18136..19159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig987 18137..19159 -
1622817047.1882746-UTR-L-elsbetiae_contig987:22585..226231622817047.1882746-UTR-L-elsbetiae_contig987:22585..22623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig987 22586..22623 -
1691684007.3127546-UTR-L-elsbetiae_contig987:22585..226231691684007.3127546-UTR-L-elsbetiae_contig987:22585..22623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig987 22586..22623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817047.125135-CDS-L-elsbetiae_contig987:19159..191751622817047.125135-CDS-L-elsbetiae_contig987:19159..19175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 19160..19175 -
1691684007.2644331-CDS-L-elsbetiae_contig987:19159..191751691684007.2644331-CDS-L-elsbetiae_contig987:19159..19175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 19160..19175 -
1622817047.142431-CDS-L-elsbetiae_contig987:19205..200301622817047.142431-CDS-L-elsbetiae_contig987:19205..20030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 19206..20030 -
1691684007.274504-CDS-L-elsbetiae_contig987:19205..200301691684007.274504-CDS-L-elsbetiae_contig987:19205..20030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 19206..20030 -
1622817047.153449-CDS-L-elsbetiae_contig987:20466..206371622817047.153449-CDS-L-elsbetiae_contig987:20466..20637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 20467..20637 -
1691684007.2844062-CDS-L-elsbetiae_contig987:20466..206371691684007.2844062-CDS-L-elsbetiae_contig987:20466..20637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 20467..20637 -
1622817047.1644132-CDS-L-elsbetiae_contig987:21979..221381622817047.1644132-CDS-L-elsbetiae_contig987:21979..22138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 21980..22138 -
1691684007.2941382-CDS-L-elsbetiae_contig987:21979..221381691684007.2941382-CDS-L-elsbetiae_contig987:21979..22138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 21980..22138 -
1622817047.1778903-CDS-L-elsbetiae_contig987:22565..225851622817047.1778903-CDS-L-elsbetiae_contig987:22565..22585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 22566..22585 -
1691684007.3035653-CDS-L-elsbetiae_contig987:22565..225851691684007.3035653-CDS-L-elsbetiae_contig987:22565..22585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig987 22566..22585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig987.18811.1prot_L-elsbetiae_contig987.18811.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig987 19160..22585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig987.18811.1

>prot_L-elsbetiae_contig987.18811.1 ID=prot_L-elsbetiae_contig987.18811.1|Name=mRNA_L-elsbetiae_contig987.18811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=397bp
MVHVTQCPEVHGGVGELCFWGIMDYACSLQGQTYSTAVCGVSRCADIFVK
NPGLCRFTSWKHLAHCCLAYLALSGSPDKYEELRASYNSVVDNGDRKAPP
LEAFRGMNCICGNTFCKSMFNFMTVAALERQHSCLGDDASATSKDDSKLC
LSNTELQGVETISFSSTAPDESSAGGVSDKRRQTTDMEGGDREASPPGRA
TGTAGVAAAPVAAAAAIAPGAAPWFAGAVGGSVGNEQHPRGAGVGFGFGP
GAGSAGSITASSITSSSDGFGPVYSFGSFGNDGFGPVSAGDTGAVTAAPS
TTARQNWNRSQDQQGQRAGDGVAPLPPLLPLMPSAQTSSTSPGPAEEDGN
DDWNRGLDLLRASEFEGAEAVELLHAVDELLAEAMLEEFGEGDSLM*
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mRNA from alignment at L-elsbetiae_contig987:18137..22623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig987.18811.1 ID=mRNA_L-elsbetiae_contig987.18811.1|Name=mRNA_L-elsbetiae_contig987.18811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4487bp|location=Sequence derived from alignment at L-elsbetiae_contig987:18137..22623- (Laminarionema elsbetiae ELsaHSoW15)
AGAAGTTCGCCGCCCAAGTGTCGCCTGGTGTAAGCCTGATGGTGCATGTG
ACGCAGTGGTGAGAGGGGAAAGAGGGGGGAGGTGGAACGGTGATATGGAA
GAGACGTGCGGGAGTTTGACGTCTGCAAGTCTTGCGAATCGAATCGAGAG
GGGGCAAATCTTCCAGGCAGCCGTTGTGGCCGTGGAAGCTTTAATTAACG
CCACCATTGTTTAGAGAAAACCCAGACTTGTTTGGCCTCGTGCTGGTGGT
GTGTTTCTCCTGCTTTGTGTGTGTTTTTTCTCGTCTCTTTTTGCGCCTTC
GCTTCCCTCCTCATCTGCGACCCGGCATTTTCGCCTGCGAAGCGTCGGAC
CTTGTGTTGTTTTGCGGTTGACACAGCAGGCCCGCTGCCTTTGCGGCTCA
CATACACGTGCACGTGCGCGCATTCCCAGCTGTTGGTATCTAATACATAC
ACCCCCCCCCCGACCCGCATAAATCTAATCCCAAGCCCCGAGGTACACGG
AGGTGTCGGCGAGCTTTGTTTCTGGGGGATCATGGACTACGCGTGTTCAC
TGCAAGGGCAAACGTACAGCACTGCTGTGTGTGGCGTGTCGCGCTGCGCG
GACATCTTCGTGAAGAACCCTGGGCTTTGTCGCTTCACGTCGTGGTGAGT
GAGTGAACGCGCGGGCGGTCGCGGATGACACGGTTTCGTGTACAAGCCAA
GAGAGCTGCCTTCCCTCTAGAGTCTCCGCAATGCACCATAAAGTACCCGC
TGCCGAGAACAGAGGCCGCGTTCTGTGCAATCCATTCCACTGCAGATGCT
TTCGAGAGCGCCGTGGATAACGTGTTTGGGAAGTGCCGGGGAACAAGAGA
CGTTGCTGCTTCCGTCGTATGCAGTTTGTTTGCTGTGTTATCCCGTCTGC
GTGCCCTATCTTGGATCGTTTGTAGCTTGTAGGGGGTTGGGTTGGAGCCT
GTGCTGCAATCGTGCCGTTGGCATTTGTACCAACGTGTTGAGCGGCATGA
ACGTAATCGCGTGGGGAATCAGTCTGTCATTCAAAATGGAAAATGGATAA
GCCGCAGCGGTGTCCTGTGCTGCGGTTGAACTTCAGCCGAACGTACGGGG
CTTCTACACTCGAAAACGTGTCCTCTGACCAGCATACCTGCGTCGTAGTG
GAACCACGGGGAAGGTGCGTCCTTTCCACCACTGATTCAGCCCCGTCGCA
TGGGAAAAATAACTACATTCGACCTACACATCACGGTGGGCTCTACCCGC
TGAAAAATTGTTGGCCGACCTCGCACATCTAATTCTCTGCAGGGGAGATG
TTGAATTCTTCTGATATTTAGGTTTTTTCTGCTCGCTTCGCCAAATATTA
CGTCTCTGTATGGAATACCGTTTGAACCCCATATCGAGTCTCTGCTCTAG
TATGGGTTAGGTTCCATCTTTGATTCTTTGTTTTATTTTAAAAATAACTA
CATTCGACCTACACTACGGGGAACATCACCTATTTTCTTTACGTCGGCTG
GACTCGACTCAAATAATAAACTCAGCAAGTACCGGGAGGTAACGGTCTCT
GCACAGACCACAGCACTGGTCGCAACAGTCGATGACCTCATCGCACCTGA
GACGCTCCCCAAACGCTCACCAAACGAACCTTATACACCCTGTGACGGCC
GTCGGACTCCTGCTTCGTCAATCGCCTACAGTATGTTACACCGAACACCA
AGTGGATAGTCCCTAGGTTCTAACCTCCTTTGTCAACGTTTCGTCTCTCT
CGGGATGTAAACTAGCCACAACAAAGCCAAGCTCATGGCCACAACCCGCC
AAGACTCACATTTATTTTTGAGTTAAGGGGAGAAGACCGGCCGATGACGC
CGCCGCGGCTTAAGGCCTGCACTCAGGCGCGAACTGATTGCGAATCGCGG
TTCGTCGTTGGCAAGCCTCACTCACTCCATCCTTCCCCTTTTCCTTCTCC
CTTCCCTTTTTTCCTTCCCTTTTTCCGTGTCCGCAGGAAACATTTGGCGC
ACTGCTGCCTGGCCTATCTGGCTCTCTCGGGCAGCCCGGACAAGTACGAA
GAGTTGCGGGCCTCGTACAACTCCGTTGTCGACAATGGCGACCGAAAGGC
CCCCCCGTTGGAGGCGTTTCGCGGCATGAATTGCATCTGTGGGAACACCT
TCTGCAAGTGCGTGCGTGGGGTGTGTCGTGTTGCGTGTTTGTGTGCTCCG
TGTGTGATGTTCTTGCTTGTTTGTTACCTTTGCGTGGAATCTGATACATG
CGCCGGTAAGGGTCGGTTCTCGCAGAGGACGGTTTAGTACCCGAGCAGTA
GGTATATATGGCCTGTAGGCTATGCAGGTTTTTTGCTCTGTCATGCGTAC
GAATTGCACGCGGTCATGAGCGACCTTGGCGGTGCTTCAGCGTTGTGCCA
CACGAGTAGCGTCAGCATAAAGATGCATCAGGCGCGAAAAAGACCGCACC
ACCGCTGTATTTTCTTGTGGAATCGCGTTCTGGTAGCCTCTCTGTATTAA
AACAATGCCCCCCCTCGTATCCGAAAGTCGATGTTCGGCGTTTGTCGTGG
TGGCCGTACGTTTCAACCCCGCAACCCCGTCCCTATTGTGCAGGTCCATG
TTCAACTTCATGACGGTTGCGGCCCTGGAAAGACAACACTCCTGTCTTGG
CGATGATGCTTCCGCCACGTCCAAGGACGACTCGAAGCTCTGCCTCTCCA
ATACCGAGCTTCAAGGCGTCGAGACAATCTCTTTCTCTTCGACGGCCCCG
GACGAGTCGTCGGCAGGGGGGGTCTCCGATAAGCGTCGACAAACAACAGA
CATGGAGGGAGGAGACAGGGAGGCGTCTCCACCCGGCAGAGCTACAGGTA
CTGCCGGCGTAGCCGCGGCACCGGTCGCAGCAGCAGCGGCGATAGCACCA
GGAGCAGCGCCTTGGTTTGCTGGAGCGGTTGGCGGCAGCGTCGGGAATGA
ACAGCACCCGAGAGGTGCGGGGGTAGGATTTGGCTTCGGGCCGGGAGCTG
GATCGGCGGGGTCGATTACAGCGAGCAGCATCACTAGCAGCAGCGACGGC
TTCGGGCCCGTTTACAGCTTCGGATCCTTTGGCAACGATGGCTTCGGGCC
CGTTTCCGCCGGCGACACAGGGGCGGTGACAGCGGCACCATCGACAACAG
CGCGGCAGAACTGGAACCGTTCCCAAGACCAACAAGGCCAGCGGGCAGGG
GATGGGGTGGCCCCGTTGCCGCCGCTGCTGCCGTTAATGCCCTCGGCACA
AACAAGCAGTACCTCCCCCGGCCCCGCGGAAGAAGATGGGAATGACGACT
GGAATAGGGGACTAGACCTGCTGCGCGCCTCGGAGTTCGAAGGCGCGGAG
GCTGTTGAACTCCTGCACGCGGTGGACGAGCTTTTGGCGGAGGCCATGTT
GGAAGAATTCGGGGAGGGCGCCAGCAATGAAGACATGCTCCCGGTGTTTG
ACTCCCTCATGTAGTAAATGATATTTGGGGAGGGGGGGTAGGGTGTCGTG
AGCCGGAGAGCTGCACTGCACGGTGTTGCTGACCTTTATTTCGCGTTGTT
TCTTGGACCCGTTGAGTGAGTGATCAGCGCACGCCGACCAGATGCTGCCA
ACAACGCGTTGTTCTTCCCACCTGTCAAGGTTGTCCGAACGTTCGAGCCA
AAGGTTAAGGAGCCTCCCAGTCTCAACAGTATCTTGCCCCCGCGACGTTC
TTTCTTATCTTAGGCCTGCCGTATCTTGGGGCCCTCTATTATACTTCAAG
TAATACTTGCGGCAGAGGTACACCTCATTTGCCGAGTTTTAATTTTTGTG
GCGCGTCGACTGTGAGTACATTTTCATATGGTGAGTTTATTTTGTTTTGC
CGCCGCATCTTGGGGCTCTCTGTTCTAATACTTGCGGCAGAGGTACACCT
TATTTGCCGTGTTTTCGTTATTGTGGCGCGTCGACTGTGAGTGCATTGTC
ATATGGAAAGTTTATTTTGTTATTGACTACTTTTATGTTTTGAGGCTGTT
CTTAACTACCAAGTTCTGAAGTGGTGGCACCGTCTGTGGATGTGCTTGTG
TGGAGTGGTGTGTATGCGCATATGAAGTATCATTCAACGGAAGGTCGTGT
TTTCTGAGGTATATAAACCTCCATCCTATCGAATTTAGAACATGAGCATC
ATTTTGTGACGATCGAGATAGAGACAGGAAGGGGTCCCCGGCTCCGCTTT
GGTGGAGTTTCCTGGGCATCTCAATAGTGCGAAAAATATTTAAAGAGGCG
TTTGAAAAACAATGGGGGCCCAGGTGACTCCCTGGGAGTGCTGCCGGAGG
TTGACTAAAGAATTACACTGCGTGCGTGTGACTTCTGTGTGTTGGTTTGC
ATGTCTTGAAACGGAAATAGCGCAGTACGCTGTGTGGTGCACTTTTTATT
TTGTCTCACTAGTGGGTCGAGAGGACGCAGGTATTTAAGGACGCCCCCCG
ATAGTAAGCCGAGCCGACCCAAAAGGCGGTGGTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig987:18137..22623-

>mRNA_L-elsbetiae_contig987.18811.1 ID=mRNA_L-elsbetiae_contig987.18811.1|Name=mRNA_L-elsbetiae_contig987.18811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2382bp|location=Sequence derived from alignment at L-elsbetiae_contig987:18137..22623- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCATGTGACGCAGTGATGGTGCATGTGACGCAGTGCCCCGAGGTA
CACGGAGGTGTCGGCGAGCTTTGTTTCTGGGGGATCATGGACTACGCGTG
TTCACTGCAAGGGCAAACGTACAGCACTGCTGTGTGTGGCGTGTCGCGCT
GCGCGGACATCTTCGTGAAGAACCCTGGGCTTTGTCGCTTCACGTCGTGC
CCCGAGGTACACGGAGGTGTCGGCGAGCTTTGTTTCTGGGGGATCATGGA
CTACGCGTGTTCACTGCAAGGGCAAACGTACAGCACTGCTGTGTGTGGCG
TGTCGCGCTGCGCGGACATCTTCGTGAAGAACCCTGGGCTTTGTCGCTTC
ACGTCGTGGAAACATTTGGCGCACTGCTGCCTGGCCTATCTGGCTCTCTC
GGGCAGCCCGGACAAGTACGAAGAGTTGCGGGCCTCGTACAACTCCGTTG
TCGACAATGGCGACCGAAAGGCCCCCCCGTTGGAGGCGTTTCGCGGCATG
AATTGCATCTGTGGGAACACCTTCTGCAAGAAACATTTGGCGCACTGCTG
CCTGGCCTATCTGGCTCTCTCGGGCAGCCCGGACAAGTACGAAGAGTTGC
GGGCCTCGTACAACTCCGTTGTCGACAATGGCGACCGAAAGGCCCCCCCG
TTGGAGGCGTTTCGCGGCATGAATTGCATCTGTGGGAACACCTTCTGCAA
GTCCATGTTCAACTTCATGACGGTTGCGGCCCTGGAAAGACAACACTCCT
GTCTTGGCGATGATGCTTCCGCCACGTCCAAGGACGACTCGAAGCTCTGC
CTCTCCAATACCGAGCTTCAAGGCGTCGAGACAATCTCTTTCTCTTCGAC
GGCCCCGGACGAGTCGTCGGCAGGGGGGGTCTCCGATAAGCGTCGACAAA
CAACAGACATGGAGGGAGGAGACAGGGAGGCGTCTCCACCCGGCAGAGCT
ACAGGTACTGCCGGCGTAGCCGCGGCACCGGTCGCAGCAGCAGCGGCGAT
AGCACCAGGAGCAGCGCCTTGGTTTGCTGGAGCGGTTGGCGGCAGCGTCG
GGAATGAACAGCACCCGAGAGGTGCGGGGGTAGGATTTGGCTTCGGGCCG
GGAGCTGGATCGGCGGGGTCGATTACAGCGAGCAGCATCACTAGCAGCAG
CGACGGCTTCGGGCCCGTTTACAGCTTCGGATCCTTTGGCAACGATGGCT
TCGGGCCCGTTTCCGCCGGCGACACAGGGGCGGTGACAGCGGCACCATCG
ACAACAGCGCGGCAGAACTGGAACCGTTCCCAAGACCAACAAGGCCAGCG
GGCAGGGGATGGGGTGGCCCCGTTGCCGCCGCTGCTGCCGTTAATGCCCT
CGGCACAAACAAGCAGTACCTCCCCCGGCCCCGCGGAAGAAGATGGGAAT
GACGACTGGAATAGGGGACTAGACCTGCTGCGCGCCTCGGAGTTCGAAGG
CGCGGAGGCTGTTGAACTCCTGCACGCGGTGGACGAGCTTTTGGCGGAGG
CCATGTTGGAAGAATTCGGGGAGGGGTCCATGTTCAACTTCATGACGGTT
GCGGCCCTGGAAAGACAACACTCCTGTCTTGGCGATGATGCTTCCGCCAC
GTCCAAGGACGACTCGAAGCTCTGCCTCTCCAATACCGAGCTTCAAGGCG
TCGAGACAATCTCTTTCTCTTCGACGGCCCCGGACGAGTCGTCGGCAGGG
GGGGTCTCCGATAAGCGTCGACAAACAACAGACATGGAGGGAGGAGACAG
GGAGGCGTCTCCACCCGGCAGAGCTACAGGTACTGCCGGCGTAGCCGCGG
CACCGGTCGCAGCAGCAGCGGCGATAGCACCAGGAGCAGCGCCTTGGTTT
GCTGGAGCGGTTGGCGGCAGCGTCGGGAATGAACAGCACCCGAGAGGTGC
GGGGGTAGGATTTGGCTTCGGGCCGGGAGCTGGATCGGCGGGGTCGATTA
CAGCGAGCAGCATCACTAGCAGCAGCGACGGCTTCGGGCCCGTTTACAGC
TTCGGATCCTTTGGCAACGATGGCTTCGGGCCCGTTTCCGCCGGCGACAC
AGGGGCGGTGACAGCGGCACCATCGACAACAGCGCGGCAGAACTGGAACC
GTTCCCAAGACCAACAAGGCCAGCGGGCAGGGGATGGGGTGGCCCCGTTG
CCGCCGCTGCTGCCGTTAATGCCCTCGGCACAAACAAGCAGTACCTCCCC
CGGCCCCGCGGAAGAAGATGGGAATGACGACTGGAATAGGGGACTAGACC
TGCTGCGCGCCTCGGAGTTCGAAGGCGCGGAGGCTGTTGAACTCCTGCAC
GCGGTGGACGAGCTTTTGGCGGAGGCCATGTTGGAAGAATTCGGGGAGGG
TGACTCCCTCATGTAGTGACTCCCTCATGTAG
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