mRNA_L-elsbetiae_contig981.18765.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig981.18765.1
Unique NamemRNA_L-elsbetiae_contig981.18765.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig981.18765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig981contigL-elsbetiae_contig981:13548..14470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-06_007380.2
Exons2
Model size496
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.7430427-CDS-L-elsbetiae_contig981:13547..136241622817042.7430427-CDS-L-elsbetiae_contig981:13547..13624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig981 13548..13624 +
1691684003.984169-CDS-L-elsbetiae_contig981:13547..136241691684003.984169-CDS-L-elsbetiae_contig981:13547..13624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig981 13548..13624 +
1622817042.7558331-CDS-L-elsbetiae_contig981:14052..144701622817042.7558331-CDS-L-elsbetiae_contig981:14052..14470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig981 14053..14470 +
1691684004.003244-CDS-L-elsbetiae_contig981:14052..144701691684004.003244-CDS-L-elsbetiae_contig981:14052..14470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig981 14053..14470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig981.18765.1prot_L-elsbetiae_contig981.18765.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig981 13548..14470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig981.18765.1

>prot_L-elsbetiae_contig981.18765.1 ID=prot_L-elsbetiae_contig981.18765.1|Name=mRNA_L-elsbetiae_contig981.18765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MVTAEATAGEEWLRSAELLAKSADSRGRVFDDPSFLLRVVDTVQSATATS
DTNTSRNGEGSNGDRAPPSPSCGSQNDCRQPRSRHKDRPGGVGAAAIPTS
DVFSQYQDNQDRDLHLDSAFDVPPPQVSPDAANTLRRVFLVLRNSCAGCP
ANNQALRQTGLAEAA
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mRNA from alignment at L-elsbetiae_contig981:13548..14470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig981.18765.1 ID=mRNA_L-elsbetiae_contig981.18765.1|Name=mRNA_L-elsbetiae_contig981.18765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=923bp|location=Sequence derived from alignment at L-elsbetiae_contig981:13548..14470+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGACAGCAGAAGCGACAGCGGGGGAAGAGTGGCTCAGGTCTGCGGA
ACTGCTGGCCAAGAGTGCCGACTCAAGGTGCCGATTCTCTGCTGGTACAA
TAGCACGTCCCGCAGTCCGCAGTAAGCTGTTACCTCGTTGGCGAAAAGAC
GTTTTGGTATCGTCTGGTGGATGCTGTATCACGTAGTCTGTGTGCGCAAG
AGCTATCTGCAACTCCTACAACGAGAGGGCTGTGATTGATAAGGTGTCAA
GCTGCTGGTATATTCTATCCTACATATGTGCAACCTAGACTACAACCTAG
TCTACAACTCGGTAGTAACTCTGTCATATCTAGGACTAGTCCTCCTGGGT
ATTGTCTTTCGCACGTAGTAGCGATGGGGTTGTTGACTGTACTCCGCCGA
AAACAGGCCAACCAGCCAGTGCATGTACACCAGGGGAGATGATAGTCGCC
CAACACCTATCGTTGCCGCCCCCCGCCTTCGATTCCGGGCACCCGACGCA
CCCAGGGGCCGAGTTTTCGACGACCCATCCTTTCTCTTGCGAGTCGTTGA
CACGGTTCAAAGCGCCACCGCGACGAGCGATACCAACACCAGCCGCAACG
GGGAGGGCAGCAATGGTGACCGGGCACCGCCATCTCCATCCTGCGGATCA
CAAAACGATTGTCGTCAGCCACGATCAAGGCACAAGGATCGTCCTGGCGG
GGTTGGTGCTGCAGCAATCCCAACAAGTGACGTTTTTTCGCAATATCAAG
ACAACCAAGACCGTGATCTGCACCTCGACTCCGCGTTCGATGTGCCGCCG
CCTCAGGTGTCGCCCGACGCCGCGAACACTCTCCGCCGAGTTTTTCTCGT
CCTGCGGAATTCTTGCGCCGGCTGCCCTGCCAATAACCAAGCCCTCCGCC
AAACCGGGCTTGCAGAAGCGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig981:13548..14470+

>mRNA_L-elsbetiae_contig981.18765.1 ID=mRNA_L-elsbetiae_contig981.18765.1|Name=mRNA_L-elsbetiae_contig981.18765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig981:13548..14470+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGACAGCAGAAGCGACAGCGGGGGAAGAGTGGCTCAGGTCTGCGGA
ACTGCTGGCCAAGAGTGCCGACTCAAGATGGTGACAGCAGAAGCGACAGC
GGGGGAAGAGTGGCTCAGGTCTGCGGAACTGCTGGCCAAGAGTGCCGACT
CAAGGGGCCGAGTTTTCGACGACCCATCCTTTCTCTTGCGAGTCGTTGAC
ACGGTTCAAAGCGCCACCGCGACGAGCGATACCAACACCAGCCGCAACGG
GGAGGGCAGCAATGGTGACCGGGCACCGCCATCTCCATCCTGCGGATCAC
AAAACGATTGTCGTCAGCCACGATCAAGGCACAAGGATCGTCCTGGCGGG
GTTGGTGCTGCAGCAATCCCAACAAGTGACGTTTTTTCGCAATATCAAGA
CAACCAAGACCGTGATCTGCACCTCGACTCCGCGTTCGATGTGCCGCCGC
CTCAGGTGTCGCCCGACGCCGCGAACACTCTCCGCCGAGTTTTTCTCGTC
CTGCGGAATTCTTGCGCCGGCTGCCCTGCCAATAACCAAGCCCTCCGCCA
AACCGGGCTTGCAGAAGCGGCAGGGCCGAGTTTTCGACGACCCATCCTTT
CTCTTGCGAGTCGTTGACACGGTTCAAAGCGCCACCGCGACGAGCGATAC
CAACACCAGCCGCAACGGGGAGGGCAGCAATGGTGACCGGGCACCGCCAT
CTCCATCCTGCGGATCACAAAACGATTGTCGTCAGCCACGATCAAGGCAC
AAGGATCGTCCTGGCGGGGTTGGTGCTGCAGCAATCCCAACAAGTGACGT
TTTTTCGCAATATCAAGACAACCAAGACCGTGATCTGCACCTCGACTCCG
CGTTCGATGTGCCGCCGCCTCAGGTGTCGCCCGACGCCGCGAACACTCTC
CGCCGAGTTTTTCTCGTCCTGCGGAATTCTTGCGCCGGCTGCCCTGCCAA
TAACCAAGCCCTCCGCCAAACCGGGCTTGCAGAAGCGGCA
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