mRNA_L-elsbetiae_contig9809.18763.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A6H5JMU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU7_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.660e-57 Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 2 Query: 5 YTAFTLAFVVYECTISGSLVHARPPAELFKIVAYSMSCLLVYRSVPMYLRLMLIWTITTAFSGVFQPLLWLDNASDSVTEQWLVWTLLALSIAGMAGNILGALTVFPSAGASSGKARRRRYKTPVKES 388 Y AFTL F +YE + GSLVH RPPAELFK+VAYS+SCLLVYRSV +YLRLMLIWTITTAFSGVFQ LLWL+N+ S E+ LVWT+L LSIAGMAGNI+GA+TVFPS G SSGKARRRRYK+ +KE+ Sbjct: 45 YAAFTLGFALYEISTGGSLVHMRPPAELFKVVAYSVSCLLVYRSVSLYLRLMLIWTITTAFSGVFQSLLWLENSGGSAIERGLVWTMLVLSIAGMAGNIIGAVTVFPSVGGSSGKARRRRYKSSLKET 172
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: D8LH51_ECTSI (Dynein light chain Tctex1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH51_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 2.230e-17 Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = -3 Query: 623 VSCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 778 VSCL+VER + R S QV STTAAFWD RADGASTVRWENETMACVI +FG+ Sbjct: 66 VSCLLVERMQQRTSAQVDSTTAAFWDPRADGASTVRWENETMACVITIFGIA 117
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A7S2UUF8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF8_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.380e-5 Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = -3 Query: 629 VSCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFG 778 VSCL+ E+ + Q+ S A+WD R DG+ T+RWEN++M+CV+++ G Sbjct: 70 VSCLLFEKEQ---GAQMTSAVTAYWDPRTDGSFTLRWENDSMSCVLVISG 116
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: C1BWU7_ESOLU (Dynein light chain Tctex-type 1 n=1 Tax=Esox lucius TaxID=8010 RepID=C1BWU7_ESOLU) HSP 1 Score: 53.1 bits (126), Expect = 2.980e-5 Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -3 Query: 623 LHLCDTNLSKTIYPTRQ-VSCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 829 + LC + LSK P + V+C+I++R + + ++ FWD DG+ T +WENE+M C++ +FG+ Sbjct: 46 VELCLSQLSKLGKPFKYIVTCIIMQRN----GAGLQTASSCFWDDTTDGSCTFKWENESMHCIVTVFGLA 111
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A6P7G356_DIAVI (dynein light chain Tctex-type-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7G356_DIAVI) HSP 1 Score: 52.8 bits (125), Expect = 3.800e-5 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = -3 Query: 623 CDTNLSKTIYPTRQV-SCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 820 C + LSKT + V +C I+++ +H+ ++ +WD+ DG TVRWEN TM CV+ +FG+ Sbjct: 46 CLSALSKTKKMFKYVITCSIMQKT----GAGLHTASSCYWDSATDGTCTVRWENNTMYCVVTVFGLA 108
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A1J4L1Z1_9EUKA (Dynein light chain Tctex-type 1 n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4L1Z1_9EUKA) HSP 1 Score: 52.4 bits (124), Expect = 5.070e-5 Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = -3 Query: 623 CLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 772 CLI+++ G +H +++ +WD+ +DG TVRWENE+M C++ ++G+ Sbjct: 61 CLILQKA----GGGLHVSSSCYWDSNSDGMVTVRWENESMHCIVSIYGLA 106
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A2F6X9_TRIVA (Tctex-1 family protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2F6X9_TRIVA) HSP 1 Score: 52.4 bits (124), Expect = 5.070e-5 Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = -3 Query: 623 CLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 772 CLI+++ G +H +++ +WD+ +DG TVRWENE+M C++ ++G+ Sbjct: 61 CLILQKA----GGGLHVSSSCYWDSNSDGMVTVRWENESMHCIVSIYGLA 106
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A7N4UZL1_SARHA (Dynein light chain Tctex-type 3 n=8 Tax=Mammalia TaxID=40674 RepID=A0A7N4UZL1_SARHA) HSP 1 Score: 52.4 bits (124), Expect = 6.080e-5 Identity = 20/53 (37.74%), Postives = 36/53 (67.92%), Query Frame = -3 Query: 623 VSCLIVERPELRPSGQ-VHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 778 V+C ++++ SG +H+ ++ FWDT +DG T+RWEN+TM C++ +F + Sbjct: 66 VTCAVMQK-----SGSGLHTASSCFWDTTSDGTCTIRWENQTMNCIVNVFAIA 113
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A2G3N1_TRIVA (Uncharacterized protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2G3N1_TRIVA) HSP 1 Score: 50.8 bits (120), Expect = 6.330e-5 Identity = 18/50 (36.00%), Postives = 35/50 (70.00%), Query Frame = -3 Query: 623 CLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 772 CLI+++ G +H +++ +WD+ +DG TVRW+NE+M C++ ++G+ Sbjct: 19 CLILQKA----GGGLHVSSSCYWDSNSDGMVTVRWKNESMHCIVSIYGLA 64 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9809.18763.1 >prot_L-elsbetiae_contig9809.18763.1 ID=prot_L-elsbetiae_contig9809.18763.1|Name=mRNA_L-elsbetiae_contig9809.18763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp MSCLLVYRSVPMYLRLMLIWTITTAFSGVFQPLLWLDNASDSVTEQWLVWback to top mRNA from alignment at L-elsbetiae_contig9809:3854..6834- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9809.18763.1 ID=mRNA_L-elsbetiae_contig9809.18763.1|Name=mRNA_L-elsbetiae_contig9809.18763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2981bp|location=Sequence derived from alignment at L-elsbetiae_contig9809:3854..6834- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9809:3854..6834- >mRNA_L-elsbetiae_contig9809.18763.1 ID=mRNA_L-elsbetiae_contig9809.18763.1|Name=mRNA_L-elsbetiae_contig9809.18763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig9809:3854..6834- (Laminarionema elsbetiae ELsaHSoW15)back to top |